Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0217 + 1630083-1630205,1630467-1630710,1631695-1632508,163...    31   0.56 
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    29   1.7  
08_02_0020 + 11303438-11304213,11304321-11304699                       29   2.3  
02_05_0076 + 25637752-25639062,25639221-25639297,25640962-256410...    29   3.0  
01_03_0014 + 11655216-11655287,11657833-11658048,11659848-116619...    27   6.9  
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986...    27   9.1  
07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381           27   9.1  

>05_01_0217 +
           1630083-1630205,1630467-1630710,1631695-1632508,
           1632775-1632844,1633007-1633239,1633345-1633564
          Length = 567

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +2

Query: 308 SETRNSLWHLHDGNNLIL---VTTCRHGKSWKDLRDERCEEDNKEYDK 442
           +E   S+ H  DG+ ++L   +   RH K WKD  +  C   +KE D+
Sbjct: 455 AEAAASVAHTLDGHRILLCSEIERLRHYKQWKDKWNNPCSRLSKEKDQ 502


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/53 (37%), Positives = 24/53 (45%)
 Frame = +2

Query: 245 FPAQRKHLVAFKGKRYVHGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLR 403
           F   RK L+  + K+   GI  E   S W LH G +   V   RH  S  DLR
Sbjct: 701 FYRSRKDLIESQLKKIQDGIAEEILISSWELHQGTSCRGVNWDRH--SLTDLR 751


>08_02_0020 + 11303438-11304213,11304321-11304699
          Length = 384

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +2

Query: 14  RLPYWRNGRNHLIFNLYAGTWPDYA 88
           R+P  R+G  H++ NLY G W DYA
Sbjct: 256 RMPRIRHGYAHVVNNLYDG-WRDYA 279


>02_05_0076 +
           25637752-25639062,25639221-25639297,25640962-25641095,
           25641178-25641242,25641431-25641482,25641912-25641994,
           25642128-25642221,25642332-25642861
          Length = 781

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 300 PCTYLFPLKATKCLR*AGNGLTVAAGGTPPFSGCSL*NNGNEMSNPSRNIISE 142
           PC  + PL ++   R   +G T A+   PP  G  L    +++S+ +   + E
Sbjct: 98  PCDAVGPLPSSPVARSRSSGATPASAAKPPLGGGRLRGASSDVSDATLEAVEE 150


>01_03_0014 +
           11655216-11655287,11657833-11658048,11659848-11661912,
           11662966-11663013,11663081-11663328,11663429-11663558,
           11663707-11663983,11664102-11664180,11664311-11664397,
           11664586-11664618
          Length = 1084

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +2

Query: 314 TRNSLWHLHDGNNLILVTTCRHGKSWKDLRDERCEEDNKEY 436
           T+N +WH+ +G +++L      G+ +K + D+ C    K Y
Sbjct: 144 TKNEVWHITNGYSIMLGKGA-FGEVYKGILDDGCPVAVKRY 183


>09_06_0182 -
           21397221-21397575,21397712-21398076,21398510-21398685,
           21398802-21399039,21399627-21400118
          Length = 541

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -1

Query: 374 GKWLLRSSYFHHVNA-TKNYGFHYQYHVHI 288
           G+W L     H++ A T NY +   Y++H+
Sbjct: 138 GEWRLTVQSGHNIEASTNNYSYSVSYYLHV 167


>07_01_0302 - 2169271-2169531,2169778-2169828,2169929-2170381
          Length = 254

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 307 TNTMYISFSFEGYQMLTLSRKWVDSSSR 224
           TNT +I++S EG+++L +  KW  S  R
Sbjct: 82  TNTEFIAYSGEGFKLL-IPSKWNPSKER 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,975,848
Number of Sequences: 37544
Number of extensions: 313437
Number of successful extensions: 934
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 934
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)