Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303E07f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.) 239 1e-63
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07) 44 1e-04
SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4) 28 4.1
SB_58138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_42163| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-09) 27 7.1
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056) 27 7.1
SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32) 27 9.4
SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12) 27 9.4
>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 239 bits (584), Expect = 1e-63
Identities = 101/175 (57%), Positives = 142/175 (81%), Gaps = 2/175 (1%)
Frame = +2
Query: 2 SRLSRLPYWRNGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISL 181
+++ +LPYW+NG NH+IFNL+AGTWPDY+ED +GFD G+AIL +AS S + R GFD+SL
Sbjct: 163 NKIRQLPYWKNGENHIIFNLFAGTWPDYSED-VGFDFGKAILVKASLSSDLIRPGFDVSL 221
Query: 182 PLFHKEHPEK--GGVPPAATVNPFPAQRKHLVAFKGKRYVHGIGSETRNSLWHLHDGNNL 355
PLF K HP K G +P + + FP +RK+ +AFKGKRY++GIGSE+RN+L+H+H+G ++
Sbjct: 222 PLFPKTHPHKDLGNLPHSCSA--FPLERKYKLAFKGKRYLNGIGSESRNALYHIHNGRDI 279
Query: 356 ILVTTCRHGKSWKDLRDERCEEDNKEYDKFDYEQLLANSTFCIVARGRRLGSYRF 520
+L+TTC+HGK+W +DERC+ DN YD++ Y++LL N+TFC+V RGRRLGS+RF
Sbjct: 280 VLLTTCKHGKAWHKHKDERCDGDNALYDRYSYDELLLNATFCLVPRGRRLGSFRF 334
>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
Length = 497
Score = 43.6 bits (98), Expect = 1e-04
Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 8 LSRLPYWR-NGRNHLIFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLP 184
L+ L W+ +G+NHLIFN+ G PD+ L G+AI A S S +R GFD +P
Sbjct: 157 LAALETWKYSGQNHLIFNMLPGGPPDF-NSILDVPLGKAIQAGGSMSTQTYRPGFDGCIP 215
Query: 185 L 187
+
Sbjct: 216 I 216
>SB_3342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 356 SSYFHHVNATKNYGFHYQYHVHI 288
SSY+HH + +++ HY +H H+
Sbjct: 260 SSYYHHHHHRRHHLNHYHHHYHL 282
>SB_38305| Best HMM Match : CW_binding_1 (HMM E-Value=0.4)
Length = 1145
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 353 LILVTTCRH-GKSWKDLRDERCEEDNKEYDKFDYE 454
L+ + +CR G D DE C++D+ +YD DY+
Sbjct: 39 LLRLASCRVVGDDDDDDDDEGCDDDDDDYDDDDYD 73
>SB_58138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 35 GRNHLIFNLYAGTWPDYAEDSLGFDP 112
GR HL+F L A TW D S G+ P
Sbjct: 7 GRCHLVFRLQARTWEDVISSS-GYRP 31
>SB_42163| Best HMM Match : 7tm_1 (HMM E-Value=5.5e-09)
Length = 337
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 142 STCSGQYSFTWVKSQRIFSIVWP 74
S + QYSFT + +R++SI++P
Sbjct: 94 SIAASQYSFTVIALERVYSILFP 116
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 365 TTCRHGKSWKDLRDERCEEDNK 430
T +SWKD+RDE EE N+
Sbjct: 280 TPVLRSQSWKDIRDEWSEEGNQ 301
>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
Length = 245
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Frame = +2
Query: 176 SLPLFHKEHPEKGGVPPAAT---VNPFPAQ 256
S P + +PEKGG PPA P+P Q
Sbjct: 174 SYPQGQEPYPEKGGYPPAGVGQHSGPYPGQ 203
>SB_15838| Best HMM Match : Peptidase_A17 (HMM E-Value=7.9e-32)
Length = 1027
Score = 27.1 bits (57), Expect = 9.4
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +2
Query: 50 IFNLYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDI 175
++ L T+ D + G DP + + + ASEIM R GF +
Sbjct: 129 VYQLLTNTYVDDVQTG-GDDPEQLLRFKQEASEIMERGGFQL 169
>SB_50086| Best HMM Match : DUF1295 (HMM E-Value=1.9e-12)
Length = 263
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 440 KFDYEQLLANSTFCIVARGRRLGSYRF 520
KF++ QL+ T C+ A G RLGS+ F
Sbjct: 132 KFNFRQLV--QTGCVTAWGLRLGSFLF 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,991,498
Number of Sequences: 59808
Number of extensions: 337589
Number of successful extensions: 1063
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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