Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E07f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    30   0.82 
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    29   1.4  
At5g49590.1 68418.m06137 hypothetical protein similar to unknown...    28   3.3  
At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger) fa...    27   5.8  

>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +2

Query: 113 GEAILARASASEIMFRE---GFDISLPLFHKEHPEKGGVPPAATVNPFPAQRKHL 268
           G  +LA   AS ++FR+   G   +L + H+E P KG +   + +NPFP+Q ++L
Sbjct: 109 GWPLLAFILASFLIFRKVHSGERRTLEIVHREAP-KGLLQLLSPLNPFPSQLRYL 162


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -3

Query: 222 GTPPFSGCSL*NNGNEMSNPSRNIISEALALANIASPGSNPKESSA*SGQVPAYKLN 52
           G+ PF+G ++   G+E S   +NII+E + L+N+   G N K +    G +   K++
Sbjct: 279 GSSPFAGIAI---GSETSGGIKNIIAEHITLSNM-GVGVNIKTNIGRGGYIKNIKIS 331


>At5g49590.1 68418.m06137 hypothetical protein similar to unknown
           protein (pir||T02348)
          Length = 128

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 266 LVA-FKGKRYVHGIGSETRNSLWHLHDGNNLILVTTCRHGKSWKDLRDERCEEDNK 430
           LVA F G    +G  ++TRN LW L     +  +    +  +W+D+    C+   K
Sbjct: 13  LVANFSGMCTSNGQSTKTRNKLWILERYRQVFRLRMVLYIINWRDINFGSCQSQKK 68


>At2g37950.1 68415.m04658 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger); contains PROSITE
           PS00190: Cytochrome c family heme-binding site signature
          Length = 207

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 151 YFGSTCSGQYSFTWVKSQRIFSIVWPSAS 65
           YF ST  G Y +   +S+++ S++ PS+S
Sbjct: 41  YFYSTTGGSYEYEGDQSRKVSSVMSPSSS 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,495,097
Number of Sequences: 28952
Number of extensions: 255808
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)