Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E04f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8DSH5 Cluster: Putative bacteriocin operon component, ...    32   6.9  
UniRef50_Q17333 Cluster: Collagen; n=1; Caenorhabditis elegans|R...    32   9.2  

>UniRef50_Q8DSH5 Cluster: Putative bacteriocin operon component,
           ScnE-like protein; n=1; Streptococcus mutans|Rep:
           Putative bacteriocin operon component, ScnE-like protein
           - Streptococcus mutans
          Length = 250

 Score = 32.3 bits (70), Expect = 6.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 200 N*EDGRIF*MAEEKQNGALEANHKKIIQIYSIFFSFRVLYTRI*NYFCGII 352
           N ++GR F +     +G LE  H K+      FFS  V+YT I +++   I
Sbjct: 73  NEKEGRTFKLQASNAHGILEIFHNKLWFTSLFFFSMAVVYTSIISFYVTFI 123


>UniRef50_Q17333 Cluster: Collagen; n=1; Caenorhabditis elegans|Rep:
           Collagen - Caenorhabditis elegans
          Length = 276

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 242 AFLLPFKKYGHLPSFLIFLHSFVE---V*SSQFRSHPELSSFFF 120
           AFL  F K+ ++P+ ++FLH F+       S++ S   L++FFF
Sbjct: 226 AFLCLFYKFSNIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFF 269


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 488,298,363
Number of Sequences: 1657284
Number of extensions: 9336967
Number of successful extensions: 24269
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24265
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)