Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E04f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    26   3.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   6.8  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   6.8  
SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  

>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/62 (25%), Positives = 33/62 (53%)
 Frame = +3

Query: 36  HAEPFRCPPQAVRPEVLSASGRFVLAAAKKK*R*FWM*PELRRSDLHKAMEEDQETRKMA 215
           H+E  RC  + V P++       + A  +++ R   +  E+R+S L    EE+++ +K+A
Sbjct: 335 HSELLRCYKELVTPKISHVDSISIKAQEEERKRQAEIEKEIRQSRL---QEEERKKKKLA 391

Query: 216 VF 221
            +
Sbjct: 392 KY 393


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 37  TLNLFDVHLRLYDRRSCPPLEGSFWQLRKKNDDNS 141
           TL LF+  + L  RRS   +  +   LRK+N  NS
Sbjct: 479 TLILFNDRICLVQRRSKSSIASTILDLRKQNPRNS 513


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 254 LEANHKKIIQIYSIFFSFRV 313
           ++  HK+++Q +SIF  FRV
Sbjct: 572 MKTGHKQVVQSFSIFPVFRV 591


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 305 FRVLYTRI*NYFCGIILRYTL 367
           F ++Y+ +  YFCG+++R  L
Sbjct: 394 FIIIYSVLGTYFCGVMVRLVL 414


>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 263 LLPMRHFAFLLPFKKYGHLPSFLIFLHSFV 174
           ++  +H  F L F  Y H+P FL F+  FV
Sbjct: 15  VIQAKHPPFPL-FHSYFHIPDFLSFVFPFV 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,042
Number of Sequences: 5004
Number of extensions: 42440
Number of successful extensions: 131
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)