Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E04f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765...    31   0.56 
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296...    29   1.7  
03_05_0834 - 28051067-28051381,28051675-28052120,28052330-280526...    29   3.0  
11_04_0057 - 12953479-12954364,12954484-12955034,12955125-129553...    28   5.2  
09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548     27   6.9  

>03_02_0774 +
           11074508-11074880,11076270-11076370,11076453-11076509,
           11076596-11076690,11077480-11077579,11078272-11078330,
           11078874-11079001,11079362-11079440,11079708-11079795,
           11080490-11080590,11080822-11080900,11081740-11081850,
           11082655-11082750,11082885-11083007,11085750-11085947,
           11086071-11086172,11086570-11086634,11086888-11087008,
           11088540-11088697,11088823-11088973,11089414-11089521,
           11089939-11090031,11090285-11090321,11090659-11090906,
           11091396-11091542,11091929-11092099,11092166-11092175,
           11093360-11093505
          Length = 1114

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 310 AKTEENTINLYNFFMICFQCAILLFFCHLKNTAIFLVS*SSSIALWRSDLLNS 152
           A TE + +    +F++     IL+  CH+   A + VS S +I + +  +LNS
Sbjct: 644 ADTENHALRTLTWFIVLSLHVILISDCHMFTIAYYTVSTSQNINIGKLKVLNS 696


>11_01_0393 +
           2961434-2961564,2961862-2961865,2962429-2963970,
           2964572-2964675,2964791-2964877,2965378-2965414,
           2965729-2965801,2965963-2967494
          Length = 1169

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 10  VPFSVFRISTLNLFDVHLRLYDRRSCPPLEGSFWQLRKKNDDNSGCDLN*EDQTSTKLWR 189
           +P  + RI+ ++       LYD R   P +G   +L  + D   GCD+  ED+    +WR
Sbjct: 480 IPVDMSRIAVVDGQVQGCLLYDVRVAGPADGELPKLTSR-DMLLGCDIPVEDKFDVLVWR 538


>03_05_0834 -
           28051067-28051381,28051675-28052120,28052330-28052671,
           28053170-28053310,28053419-28053489,28053575-28053640,
           28053874-28054017,28054149-28054207,28054246-28054369,
           28054730-28054862,28055138-28055187,28055715-28055824,
           28057355-28057436,28057536-28057705,28057812-28058498,
           28058645-28058794,28058908-28059039,28059444-28059594,
           28060253-28060344,28062478-28062585
          Length = 1190

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -2

Query: 331 LNACI*HAKTEENTINLYNFFMICFQCAILLFFCHLKNTAIFLVS*SSSIALWRSDL 161
           +N C  ++   +N  N+   F +C +   L+    L+N  I+ +  SS    WR+ +
Sbjct: 603 VNPCTWNSVICDNNYNVVQVFFVCSKLVCLMTDALLQNIGIYGIHWSSITTNWRASV 659


>11_04_0057 -
           12953479-12954364,12954484-12955034,12955125-12955342,
           12957514-12957678,12960562-12960898
          Length = 718

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 268 MICFQCAILLFFCHLKNTAIFLVS*SSSIALWRSDLLNSGHIQNYRHFFFA 116
           ++ F   +      L   AI L++  + +A W S+ LN GH  NY +F  A
Sbjct: 629 LLFFGAGVASIIATLVIKAINLITGRNGMAPWLSNNLNEGH-YNYYYFLLA 678


>09_06_0141 - 21097479-21098094,21098209-21098970,21100463-21100548
          Length = 487

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 28  RISTLNLFDVHLRLYDRRSCPPLEGSFWQLRKKNDDNSG 144
           R+STLN  DV +  Y+R     L  S       +DD+ G
Sbjct: 108 RVSTLNKLDVIIGRYERHGMRSLANSVNNFLDADDDDGG 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,955,053
Number of Sequences: 37544
Number of extensions: 248087
Number of successful extensions: 629
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)