Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E04f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)             28   4.1  
SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 123 FSQLPKRTFQRRTRPPVVQPEVDIEKVQRGDSKYTKRNET 4
           F+++P+ T      PP  QPEV+ E+ +  D + +  N++
Sbjct: 419 FAKMPEETIIAPPSPPPAQPEVEPEQQESSDEETSVSNDS 458


>SB_21363| Best HMM Match : Taeniidae_ag (HMM E-Value=0.52)
          Length = 328

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/62 (20%), Positives = 27/62 (43%)
 Frame = +3

Query: 150 PELRRSDLHKAMEEDQETRKMAVFFKWQKKSKMAHWKQIIKKLYKFIVFSSVFACYIHAF 329
           P+LRR    +     +E        KW+K+ +M  WK++   +  ++ F  +    +   
Sbjct: 143 PKLRRKSSKRLKRPKREMPTTNRSGKWEKRRQMHFWKELYYIIKWYMEFHKIVGAILRVK 202

Query: 330 KI 335
           K+
Sbjct: 203 KL 204


>SB_11299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3762

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 117  QLPKRTFQRRTRPPVVQPEVDIEKVQRGD 31
            Q PK + ++ T+PP V P+      +RGD
Sbjct: 2527 QTPKPSAEQTTQPPAVTPQFSFGIPKRGD 2555


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,123,154
Number of Sequences: 59808
Number of extensions: 292327
Number of successful extensions: 773
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)