Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E04f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.     32   0.29 
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.      27   8.1  

>U18385-1|AAA62505.1|  276|Caenorhabditis elegans collagen protein.
          Length = 276

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -1

Query: 242 AFLLPFKKYGHLPSFLIFLHSFVE---V*SSQFRSHPELSSFFF 120
           AFL  F K+ ++P+ ++FLH F+       S++ S   L++FFF
Sbjct: 226 AFLCLFYKFSNIPNCVLFLHFFLNCNFTCKSKYFSFSNLANFFF 269


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 240 SKMAHWKQIIKKLYKFIVFSSVFACYIHAFKITFAV*SCVTHFN 371
           +K+ HWK+I   L +  + S+    ++H  ++T  + S +T FN
Sbjct: 177 TKLPHWKRIKSLLIEGFIVSAPLEHFLHLPEVTITMQS-ITIFN 219


>Z81490-1|CAB04014.1|  510|Caenorhabditis elegans Hypothetical
           protein CC4.3 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +2

Query: 68  CTTGGLVRLWKVRFGSCEKKMTI------ILDVT*IEKIRPPQ 178
           C+T G +R+W  + G C     +      IL+V  I K  PPQ
Sbjct: 367 CSTDGSIRVWHGKSGECLSTFRVGSEDYPILNVIPIPKSDPPQ 409


>U29488-8|AAA68777.1|  320|Caenorhabditis elegans Hypothetical
           protein C56C10.9 protein.
          Length = 320

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 214 AIFLVS*SSSIALWRSDLLNSGHIQ 140
           AIF++S + SI L RSD L + H++
Sbjct: 7   AIFMISSALSIPLNRSDFLENDHVE 31


>AF330595-1|AAK00353.1|  510|Caenorhabditis elegans SMU-1 protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = +2

Query: 68  CTTGGLVRLWKVRFGSCEKKMTI------ILDVT*IEKIRPPQ 178
           C+T G +R+W  + G C     +      IL+V  I K  PPQ
Sbjct: 367 CSTDGSIRVWHGKSGECLSTFRVGSEDYPILNVIPIPKSDPPQ 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,606,842
Number of Sequences: 27780
Number of extensions: 238239
Number of successful extensions: 718
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)