Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E02f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    22   3.8  
AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory recept...    21   5.0  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   8.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   8.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 392 AQQRGVS*VREASSEGGGGLAPRSAR 315
           AQQR V+ V+     GGG   P  AR
Sbjct: 311 AQQRRVAAVQVPQLAGGGRRGPGPAR 336


>AM292379-1|CAL23191.2|  376|Tribolium castaneum gustatory receptor
           candidate 58 protein.
          Length = 376

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 100 YTNIVFFCYYYSVSVKHTQKVRI 32
           Y  +V     YS SV +TQ VRI
Sbjct: 134 YFQLVLSISVYSSSVGYTQYVRI 156


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 472 GPDGGGDELRP 440
           G +GGGD++ P
Sbjct: 308 GSEGGGDDISP 318


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -2

Query: 472 GPDGGGDELRP 440
           G +GGGD++ P
Sbjct: 310 GSEGGGDDISP 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,286
Number of Sequences: 336
Number of extensions: 1084
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)