Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E02f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    28   0.97 
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   1.7  

>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
 Frame = +1

Query: 91  YLYISII-AF*LDA*KLFTAPSLSIVSFWEFFVSVGAFALLIPNDAVSLGRLLRVCVPFL 267
           + +IS+  AF L   +L +       S W F V  G+F LL+P  A ++   L V +P  
Sbjct: 116 FSWISVANAFGLLLLRLISIYDFLTYSSWSFSVKGGSFLLLLPL-AYNITLFLLVIIP-- 172

Query: 268 VSVFPPASXRPALVWQRALLGARPPP 345
             +F P +  P + + +    ARP P
Sbjct: 173 --LFFPRAWSPTVKFSKV---ARPSP 193


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 502 ERVMLVSLALGPDGGGDELRPLL 434
           ER+  ++LALGP+   DEL P L
Sbjct: 33  ERLSTIALALGPERTRDELIPFL 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,154,135
Number of Sequences: 5004
Number of extensions: 16002
Number of successful extensions: 36
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)