Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E02f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)                 46   1e-05
SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)              24   2.2  

>SB_908| Best HMM Match : DUF1682 (HMM E-Value=3.1e-38)
          Length = 326

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 26/100 (26%), Positives = 50/100 (50%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGGD-----ELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           KP + ++V++ +  +   G         L  +++LV + +D++++F+L KEA AK +K R
Sbjct: 173 KPLKPKKVLIFNFTVASKGNTKVQDMARLESMMKLVLHCIDRVRKFRLGKEARAKADKNR 232

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
           +++ E  L+  H                    R++AEDDP
Sbjct: 233 RELEENLLKQTHLQRQEAAQLRREEKRRADKERMMAEDDP 272


>SB_19519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 401

 Score = 24.2 bits (50), Expect(2) = 2.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 211 IPNDAVSLGRLLRVCVPFLVSVF--PPASXRPALVWQRALLGARPPPPSDD 357
           +P D++ +  + RV     +  +  PP S  P        +GA PPPP DD
Sbjct: 172 LPIDSIRVSAIRRVSSASTLPSWNRPPPSGAPP----PPPIGAPPPPPPDD 218



 Score = 23.4 bits (48), Expect(2) = 2.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +1

Query: 337 PPPPSDDASRT 369
           PPPP DD S T
Sbjct: 213 PPPPDDDVSMT 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,687,722
Number of Sequences: 59808
Number of extensions: 119658
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)