Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E02f
         (521 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC013600-1|AAH13600.2|  358|Homo sapiens CCDC47 protein protein.       48   2e-05
BC008905-1|AAH08905.1|  483|Homo sapiens coiled-coil domain cont...    48   2e-05
AK075387-1|BAC11587.1|  483|Homo sapiens protein ( Homo sapiens ...    48   2e-05
AK027844-1|BAB55407.1|  483|Homo sapiens protein ( Homo sapiens ...    48   2e-05
AK027786-1|BAB55367.1|  480|Homo sapiens protein ( Homo sapiens ...    48   2e-05
AF226054-1|AAF86954.1|  483|Homo sapiens GK001 protein.                48   2e-05

>BC013600-1|AAH13600.2|  358|Homo sapiens CCDC47 protein protein.
          Length = 358

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 226 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 285

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 286 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 325


>BC008905-1|AAH08905.1|  483|Homo sapiens coiled-coil domain
           containing 47 protein.
          Length = 483

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 351 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 411 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 450


>AK075387-1|BAC11587.1|  483|Homo sapiens protein ( Homo sapiens
           cDNA PSEC0077 fis, clone NT2RP2003902, highly similar to
           GK001 protein. ).
          Length = 483

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 351 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 411 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 450


>AK027844-1|BAB55407.1|  483|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14938 fis, clone PLACE1010622, weakly similar to
           TROPONIN T, CARDIAC MUSCLE ISOFORMS. ).
          Length = 483

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 351 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 411 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 450


>AK027786-1|BAB55367.1|  480|Homo sapiens protein ( Homo sapiens
           cDNA FLJ14880 fis, clone PLACE1003369. ).
          Length = 480

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 351 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 411 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 450


>AF226054-1|AAF86954.1|  483|Homo sapiens GK001 protein.
          Length = 483

 Score = 48.0 bits (109), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
 Frame = -2

Query: 517 KPPETERVMLVSLALGPDGGG-----DELRPLLQLVFYILDKLKRFKLSKEALAKCEKRR 353
           K P+T+R +L +  +   G       + L PL+ +V Y +DK K+F+L++E   K +K R
Sbjct: 351 KLPDTKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNR 410

Query: 352 QKVAEAWLRGAHXXXXXXXXXXXXXXXXXXXXRILAEDDP 233
            +V E +L+  H                    RI+ E+DP
Sbjct: 411 ARVEENFLKLTHVQRQEAAQSRREEKKRAEKERIMNEEDP 450


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,006,172
Number of Sequences: 237096
Number of extensions: 645722
Number of successful extensions: 1924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)