Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E02f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24330.1 68417.m03492 expressed protein hypothetical protein ...    36   0.017
At4g30790.1 68417.m04362 expressed protein                             29   2.5  
At5g10310.1 68418.m01196 expressed protein                             27   5.8  
At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein ...    27   7.7  

>At4g24330.1 68417.m03492 expressed protein hypothetical protein -
           Caenorhabditis elegans,PID:e1350884
          Length = 478

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = -2

Query: 514 PPETERVMLVSLALGPDGGGDELRPLLQLVFYILDKLKRFKLSKEALAKCEKRRQKVAE 338
           P +  +++L   AL      D++  L+ L+ Y +D + R+KLS +A  K +  RQK A+
Sbjct: 358 PGKHRKMLLFKFALPDIKHMDDMVRLIALIPYYIDLIGRYKLSSQARNKTDGARQKAAQ 416


>At4g30790.1 68417.m04362 expressed protein
          Length = 1148

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 157 SIVSFWEFFVSVGAFALLIPNDAVSLGRLLRVCVPFLVSVFP-PASXRPALVWQRALLGA 333
           S+ S   F  SV   AL   +D + L   +++    L+S F  PAS R   V+ +A+L +
Sbjct: 35  SVESVMRFVESVSGIAL---SDQLLLSLDMKLEPQKLLSAFGLPASDREVFVFNKAMLQS 91

Query: 334 RPPPPSDD 357
              PPS +
Sbjct: 92  NSHPPSPE 99


>At5g10310.1 68418.m01196 expressed protein 
          Length = 122

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 262 FLVSVFPPASXRPALVWQRALLGARPP 342
           FL  + PP S + AL+  +A LG+ PP
Sbjct: 27  FLQPIQPPISPQVALIEDKARLGSTPP 53


>At3g01030.1 68416.m00004 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 353

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 206 RAKAPTETKNSQNETIESEGAVNN 135
           R K+ ++TK  + E+IE+E  +NN
Sbjct: 309 RNKSKSQTKRCREESIEAEAGINN 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,123,482
Number of Sequences: 28952
Number of extensions: 90236
Number of successful extensions: 282
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)