Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303E01f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1049 + 8275837-8275859,8276428-8276503,8276545-8276634,827... 30 1.3
05_07_0105 - 27716126-27716218,27716548-27716658,27716764-277168... 29 3.0
05_05_0290 - 23879064-23880035 29 3.0
04_04_1191 + 31599067-31600194 29 3.0
05_05_0174 - 22960732-22960815,22960907-22961419,22961576-229620... 28 4.0
01_01_0274 - 2263304-2264211,2264490-2264673 28 4.0
07_03_0433 - 18169930-18170029,18171183-18171307,18172192-181723... 28 5.2
05_07_0366 + 29691093-29691590 28 5.2
10_08_0949 - 21759821-21759833,21759985-21760301,21760650-217607... 27 6.9
10_04_0009 + 7477914-7478411 27 6.9
07_01_0461 + 3492302-3492413,3492868-3492964,3493053-3493131,349... 27 6.9
03_02_0291 + 7148768-7148853,7148966-7149170,7149823-7150238,715... 27 6.9
01_07_0005 + 40364385-40364732,40365299-40365448 27 6.9
09_06_0274 + 21967740-21968230,21968411-21968550,21968711-219689... 27 9.1
09_04_0291 + 16433097-16433942,16434708-16434851,16435226-164353... 27 9.1
06_01_1088 - 8926361-8927301,8927437-8927705,8927850-8929023,892... 27 9.1
04_02_0002 + 8412568-8412781,8412915-8413015,8413114-8413185,841... 27 9.1
>01_01_1049 +
8275837-8275859,8276428-8276503,8276545-8276634,
8276721-8276836,8276918-8277017,8277808-8277879,
8277954-8278001,8278093-8278170,8278272-8278391,
8278496-8278601,8279574-8279737,8280403-8280537,
8280766-8280896,8282016-8282094,8282284-8282373
Length = 475
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 352 LDGLHDPVDDLVLDTGILTLGVLSDRDHVNVV 257
L G+ PVDDL D ++ G++ D+D N+V
Sbjct: 47 LKGMGFPVDDLEFDPDLVIRGLIMDKDKGNLV 78
>05_07_0105 -
27716126-27716218,27716548-27716658,27716764-27716815,
27716895-27717034,27717298-27717422,27717514-27717638,
27717853-27717898,27718374-27718947
Length = 421
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 236 EGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEA-STRVAEFAFQFARE 412
E ++ L + D+V N +G+ IE EI+DGVV +++ + ST V + A +
Sbjct: 255 EALQKLNKHYDIVV---NIQGDEPLIEPEIIDGVVMALQRAPDAVFSTAVTALKPEDASD 311
Query: 413 NKRKK 427
R K
Sbjct: 312 TNRVK 316
>05_05_0290 - 23879064-23880035
Length = 323
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 403 ELEGELR-HSRTGLLRDQLDGLHDPV-DDLVLDTGIL 299
E EG +R H R LR LD +HD + DD D+ IL
Sbjct: 81 EFEGFIRRHRRASTLRRVLDSIHDDLADDQERDSSIL 117
>04_04_1191 + 31599067-31600194
Length = 375
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 120 LLAFTESIAFWGIPNLPSGPLTAVTSTS 37
LL E + FWG+PNL S P + TS
Sbjct: 290 LLTSLERLNFWGLPNLLSLPANLASLTS 317
>05_05_0174 -
22960732-22960815,22960907-22961419,22961576-22962058,
22964191-22964673
Length = 520
Score = 28.3 bits (60), Expect = 4.0
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +2
Query: 110 NANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTL 253
+A +GL + P+G+G+ +L+ ++ F L + P SL G+ +L
Sbjct: 337 SALNVGLGVGAILPLGRGFMNLSSSVPDRFYLGGHSSPVCSLSGLSSL 384
>01_01_0274 - 2263304-2264211,2264490-2264673
Length = 363
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/29 (51%), Positives = 18/29 (62%)
Frame = -2
Query: 373 TGLLRDQLDGLHDPVDDLVLDTGILTLGV 287
TGLL ++GL D VDDLV L +GV
Sbjct: 214 TGLLCAGMEGLDDGVDDLVAGIDDLEVGV 242
>07_03_0433 -
18169930-18170029,18171183-18171307,18172192-18172358,
18173027-18173081,18173409-18173491,18173493-18173622,
18174482-18174691
Length = 289
Score = 27.9 bits (59), Expect = 5.2
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = -3
Query: 384 ATLVLASSVISLMDCTTPSTISCSIPE-YSPSVFSLIVTTSTLSYSVLI 241
A+L+ +S+ISLMDC P I +PE S +F L T T ++S+L+
Sbjct: 129 ASLLKLTSLISLMDCRYPIEI-FPLPEGASLGIFQLEKTFKT-TFSLLV 175
>05_07_0366 + 29691093-29691590
Length = 165
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Frame = -2
Query: 520 CPGTWWRARDNSAGRGRLTSXHNI---SFVYSRDLLPLVFSG 404
C WWR R GRGR N + V D LP VF G
Sbjct: 76 CRERWWRRRPAHRGRGRGGRRRNSGGNATVAGGDALPEVFVG 117
>10_08_0949 -
21759821-21759833,21759985-21760301,21760650-21760728,
21760816-21760912,21761305-21761410
Length = 203
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 97 RFLGNTEFAIWTPNSCYIHFLPFDRYF 17
RFL EF N YIH+L +RYF
Sbjct: 17 RFLLELEFIQCLANPTYIHYLAQNRYF 43
>10_04_0009 + 7477914-7478411
Length = 165
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 520 CPGTWWRARDNSAGRGRLTSXHNI---SFVYSRDLLPLVFSG 404
C WW+ R GRGR N + V D LP VF+G
Sbjct: 76 CRERWWQRRPAHRGRGRGGRRRNSGGNATVAGGDALPEVFAG 117
>07_01_0461 +
3492302-3492413,3492868-3492964,3493053-3493131,
3493484-3493794,3494219-3494231
Length = 203
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 97 RFLGNTEFAIWTPNSCYIHFLPFDRYF 17
RFL EF N YIH+L +RYF
Sbjct: 19 RFLLELEFIQCLANPTYIHYLAQNRYF 45
>03_02_0291 +
7148768-7148853,7148966-7149170,7149823-7150238,
7150325-7150631,7150722-7151186
Length = 492
Score = 27.5 bits (58), Expect = 6.9
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Frame = +2
Query: 2 IFEAAKVPIEWE------EVDVTAVRGPDGKFGI-PQKAIDSVNANKI 124
I A V + WE EV++ V+ DG + + P+KA+D VN N I
Sbjct: 157 IITGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVDMVNENTI 204
>01_07_0005 + 40364385-40364732,40365299-40365448
Length = 165
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/70 (27%), Positives = 29/70 (41%)
Frame = -3
Query: 456 IILALCTAVTFFLLFSLANWKANSATLVLASSVISLMDCTTPSTISCSIPEYSPSVFSLI 277
+ L LC +VTF + L W A A L S+ +S + + + + SLI
Sbjct: 65 VALMLCGSVTFAIGLLLMPWVAGVALLFGLSAAVSTLSSGVFGKAAAAASSPVVTDLSLI 124
Query: 276 VTTSTLSYSV 247
+T SV
Sbjct: 125 ITIKIFKRSV 134
>09_06_0274 +
21967740-21968230,21968411-21968550,21968711-21968905,
21969524-21969652,21970063-21970218,21970507-21970589,
21972229-21972433,21972601-21972805,21973059-21973194,
21973990-21974164,21974470-21974528,21974642-21974716,
21974804-21974920,21975010-21975080,21975170-21975473,
21975721-21976086,21976404-21976514
Length = 1005
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 445 FVYSRDLLPLVFSGELEGELRHSRT 371
+VY R+LLP +G EG++ H T
Sbjct: 175 YVYHRELLPRKVNGPWEGKISHIAT 199
>09_04_0291 +
16433097-16433942,16434708-16434851,16435226-16435390,
16435551-16435562
Length = 388
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
Frame = -3
Query: 300 SPSVFSLIVTT-STLSYSV----LIPSKLLQGLTLAYKSNSFLRAKL 175
+P++ S +VT+ TL Y L P+KLL+GL +YK+ L+ L
Sbjct: 257 APNLLSAMVTSLETLDYYYYALPLSPTKLLKGLPSSYKNLKRLKVHL 303
>06_01_1088 -
8926361-8927301,8927437-8927705,8927850-8929023,
8929132-8929399
Length = 883
Score = 27.1 bits (57), Expect = 9.1
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -3
Query: 411 SLANWKANSATLVLASSVISLMDCTTPSTIS-CSIPEYSPSVFSL-IVTTSTLSYSVLIP 238
S ++ +N T + + I L C + C PEY PS+ S+ I ++S L S+ +
Sbjct: 752 SSSSSSSNGTTCLSGLTYIGLYSCEDLQNLDRCLSPEYLPSIKSIEIDSSSDLGLSMPVD 811
Query: 237 S----KLLQGLTLAYK 202
S K LQ L + K
Sbjct: 812 SFVGFKYLQDLKIHCK 827
>04_02_0002 +
8412568-8412781,8412915-8413015,8413114-8413185,
8413267-8413380,8414248-8414269,8414450-8414598,
8415054-8415203,8415369-8415401,8418268-8418474
Length = 353
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 445 FVYSRDLLPLVFSGELEGELRHSRT 371
+VY R+LLP +G EG++ H T
Sbjct: 36 YVYHRELLPRKVNGPWEGKISHIAT 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,412
Number of Sequences: 37544
Number of extensions: 259787
Number of successful extensions: 849
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -