Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303E01f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.) 121 4e-28
SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4) 31 0.44
SB_55110| Best HMM Match : Squash (HMM E-Value=0.21) 31 0.76
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05) 30 1.0
SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 29 3.1
SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35) 29 3.1
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 28 4.1
SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4) 28 4.1
SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041) 28 5.4
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 27 9.4
SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_932| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-11) 27 9.4
>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 121 bits (291), Expect = 4e-28
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = +2
Query: 188 RKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEE 367
+ E DL+ANV C+SL GIKT +DN+D+V IRE TEGEY+ +EHE V GVV+ +K+IT
Sbjct: 89 KTELDLFANVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRR 148
Query: 368 ASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
S R+A+FAF +A ++ RKKVT VHKANIM+
Sbjct: 149 KSQRIAKFAFDYATKHNRKKVTCVHKANIMK 179
>SB_58812| Best HMM Match : Paramecium_SA (HMM E-Value=3.4)
Length = 327
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 50 VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 101
Score = 31.5 bits (68), Expect = 0.44
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 242 VISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMAISY 293
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 82 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 133
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 98 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 149
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 114 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 165
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 130 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 181
Score = 30.7 bits (66), Expect = 0.76
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 146 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 197
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 194 VISYLNCVPFKTCTAMVISYLNCVPSKTCTAMAISYLNCVPSKTCTAMVISY 245
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T SY +PSK + ++Y
Sbjct: 34 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISY 85
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V S T +SY +P K + ++Y
Sbjct: 162 VISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPFKTCTAMVISY 213
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + + Y V T +SY +PSK + ++Y
Sbjct: 178 VISYLNCVPSKTCTAMVISYLNCVPFKTCTAMVISYLNCVPSKTCTAMAISY 229
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
V S ++C T + + Y V S T +SY +PSK + ++Y
Sbjct: 66 VKSYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVISY 117
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = -3
Query: 360 VISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
VIS ++C T + Y V S T +SY +PSK + +Y
Sbjct: 210 VISYLNCVPSKTCTAMAISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSY 261
Score = 27.5 bits (58), Expect = 7.1
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -3
Query: 357 ISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAY 205
IS ++C T + + Y V S T SY +PSK + ++Y
Sbjct: 227 ISYLNCVPSKTCTAMVISYLNCVPSKTCTAMVKSYLNCVPSKTCTAMVISY 277
>SB_55110| Best HMM Match : Squash (HMM E-Value=0.21)
Length = 573
Score = 30.7 bits (66), Expect = 0.76
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 145 HQGTLQANFIGIYRVNRFLGNTEFAIWTPNSCYIHFLPFDRYF 17
H+G +AN +G+Y++ +TE A T + CY+ F P YF
Sbjct: 80 HRG--EANIVGMYKIKNVTKDTE-AKETLSGCYVVFPPSLNYF 119
>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
Length = 422
Score = 30.3 bits (65), Expect = 1.0
Identities = 23/80 (28%), Positives = 37/80 (46%)
Frame = -3
Query: 366 SSVISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAYKSNSFL 187
+SV S TTP + + PE P I+ T + + L P+K +Q + + + S +
Sbjct: 28 ASVTSSQASTTPIITAVTNPETQPRQTCAILPQKTQAQTPLTPTKTVQ-IGVGHTSPQVV 86
Query: 186 RAKLSDL*PLPTGVIRGPFK 127
S P+ +RGPFK
Sbjct: 87 MLSGS---PIKLTQVRGPFK 103
>SB_52191| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 529
Score = 28.7 bits (61), Expect = 3.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -3
Query: 375 VLASSVISLMDCTTPSTISCSIP 307
+L+ ++ ++ CTTP +SC+IP
Sbjct: 91 ILSCTIPRILGCTTPRILSCTIP 113
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -3
Query: 375 VLASSVISLMDCTTPSTISCSIP 307
+L +V ++DCT P + C++P
Sbjct: 59 ILGCTVPKILDCTIPRILGCTVP 81
>SB_38621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.7 bits (61), Expect = 3.1
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = +2
Query: 134 GPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGI 313
G P +R +N + + D ++V + + +K +Y V + R G+ S I
Sbjct: 5 GASSPPSVSPWRQMNTSNISDVDGLSSVERRQYNKALKAMYQIVRLGVGR----GDASQI 60
Query: 314 EHEIVDGVVQSIKLITEEASTRVAEFA-FQFARENKRK 424
+ EI+ +S + + +R+AE A +F RK
Sbjct: 61 DKEIISETTESSDEVADPIDSRIAELASMKFGNSKSRK 98
>SB_33736| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-35)
Length = 368
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Frame = -3
Query: 456 IILALCTAVTFFLLFSLA-NWKANSATLVLASSVISLMDCTTPSTISCSIPEYSPSVFSL 280
+I+A+ +T + A K N+ + LA S ++L P++++C+ Y PS L
Sbjct: 44 LIIAINVLITVLFVRKRALRTKTNTLLVSLAISDLNLGFIGIPTSVACNAFVYYPSTQGL 103
Query: 279 IVTTSTL 259
+T++ +
Sbjct: 104 CITSAVI 110
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 28.3 bits (60), Expect = 4.1
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Frame = -3
Query: 381 TLVLASSVISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTLSYSVLIPSKLLQGLTLAYK 202
T L S I + TTP + + P SP++ L TT L ++ + L T+ +
Sbjct: 33 TSPLTSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTTPLL----MVTTSTLPPPTIPFL 88
Query: 201 SNS--FLRAKLSDL*PLPTGVIRGPFKPILLAFTESIAFWGIPNL-PSGPLTAVTST 40
+ + L S L P PT P+L+ T + IP L + PL VT++
Sbjct: 89 ATTTPLLMVTTSPL-PSPTIPFLATTTPLLMVTTSPLPSPTIPFLATTAPLLMVTTS 144
>SB_29996| Best HMM Match : Bombolitin (HMM E-Value=4.4)
Length = 316
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 79 EFAIWTPNSCYIHFLPFDRY 20
EF W PNSC I F+ F ++
Sbjct: 21 EFDFWEPNSCRIRFVDFWKF 40
>SB_54070| Best HMM Match : Phage_integr_N (HMM E-Value=0.041)
Length = 988
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 117 LAFTESIAFWGIPNLPSGPLTAVTSTSSHSIG 22
+A ++FW P + + P T VTS ++ +IG
Sbjct: 616 IASWNGVSFWLYPGMAATPTTVVTSDAAGAIG 647
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = -3
Query: 396 KANSATLVLASSVISLMDCTTPSTISCSIPEYSPSVFSLIVTTSTL 259
K N+ + LA S ++L P++++C+ Y PS L +T++ +
Sbjct: 885 KTNTLLVSLAISDLNLGFIGIPTSVACNAFVYYPSTQGLCITSAVI 930
>SB_22141| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 218 RPCK--SLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG 334
+PC L G+KT+ +N+ + I + ++ G+ VDG
Sbjct: 141 KPCMRGELYGVKTITENIALGKITMQSSTDHGGVPSRAVDG 181
>SB_932| Best HMM Match : Peptidase_A17 (HMM E-Value=2.4e-11)
Length = 665
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 278 IRENTEGEYSGIEHEIVDGVVQSIKLITEEASTRVAEFAFQFARE 412
+RE E E E+VD V ++ + S R E A +FA E
Sbjct: 51 LRETAEDNREAFEAEVVDSVAKNFYVDDLLKSVRTPEAACRFAAE 95
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,712,361
Number of Sequences: 59808
Number of extensions: 283933
Number of successful extensions: 999
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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