Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303E01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical pr...   247   3e-66
AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical ...   129   1e-30
Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical pr...   124   4e-29
Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical pr...   119   1e-27
U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redunda...    29   1.5  
Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z49073-1|CAA88886.1|  206|Caenorhabditis elegans Hypothetical pr...    28   3.5  
AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical...    28   4.7  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    27   6.2  
Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.       27   8.1  
AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondria...    27   8.1  

>Z79755-1|CAB02111.2|  358|Caenorhabditis elegans Hypothetical
           protein F43G9.1 protein.
          Length = 358

 Score =  247 bits (605), Expect = 3e-66
 Identities = 118/153 (77%), Positives = 132/153 (86%)
 Frame = +2

Query: 2   IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
           IFEAA  PI W+ VDVT V+G DG F IP + I+ ++ANK+GLKGPL TP+GKG+RSLNL
Sbjct: 46  IFEAADAPIAWDPVDVTPVKGRDGVFRIPSRCIELMHANKVGLKGPLETPIGKGHRSLNL 105

Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
           A+RKEF LYANVRPC+SLEG KTLYDNVDVVTIRENTEGEYSGIEHEIV GVVQSIKLIT
Sbjct: 106 AVRKEFSLYANVRPCRSLEGHKTLYDNVDVVTIRENTEGEYSGIEHEIVPGVVQSIKLIT 165

Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
           E AS  VA FAF++AR+N RK VTAVHKANIMR
Sbjct: 166 ETASRNVASFAFEYARQNGRKVVTAVHKANIMR 198



 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/18 (72%), Positives = 13/18 (72%)
 Frame = +1

Query: 466 SDGLFLRCCRELATKYPD 519
           SDGLFL  CRE A  YPD
Sbjct: 200 SDGLFLSICREQAALYPD 217


>AC006610-5|AAK85453.1|  373|Caenorhabditis elegans Hypothetical
           protein C30F12.7 protein.
          Length = 373

 Score =  129 bits (312), Expect = 1e-30
 Identities = 67/154 (43%), Positives = 96/154 (62%), Gaps = 1/154 (0%)
 Frame = +2

Query: 2   IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKG-YRSLN 178
           IF     P+ +EEV V++    DG       AI+    N + +KG + T      + S N
Sbjct: 57  IFSFCHAPVNFEEVQVSSSL-LDGDMDAAMLAIER---NGVAIKGNIETKHDDPQFNSRN 112

Query: 179 LALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLI 358
           + LR + DLYAN+  C ++  + T +  +D+V IRENTEGEYSG+EHE V G+V+SIK++
Sbjct: 113 VELRTKLDLYANILHCVTIPTVPTRHSGIDIVLIRENTEGEYSGLEHEAVPGIVESIKIV 172

Query: 359 TEEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
           T E   R++  AF++A+ N RKKVTAVHKANI +
Sbjct: 173 TREKIERISRMAFEYAKANGRKKVTAVHKANIQK 206


>Z46242-1|CAA86325.2|  396|Caenorhabditis elegans Hypothetical
           protein F35G12.2 protein.
          Length = 396

 Score =  124 bits (299), Expect = 4e-29
 Identities = 66/158 (41%), Positives = 99/158 (62%), Gaps = 5/158 (3%)
 Frame = +2

Query: 2   IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGK-GYRSLN 178
           I  A + P+++E V++T+            +AI ++  N + LKG + T      + S N
Sbjct: 73  ILSAVQAPVDFEVVNLTSKEDASEDLA---EAITAIKRNGVALKGNIETKFDNPSFVSRN 129

Query: 179 LALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG----VVQS 346
           L LR++ +LYANV  C ++  + + +  +D+V IRENTEGEYSG EHE V+     VV+S
Sbjct: 130 LELRRQLNLYANVLHCSTIPTVPSRHTGIDMVIIRENTEGEYSGNEHEAVNAPHPRVVES 189

Query: 347 IKLITEEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
           +K++T E S ++  FAFQFA++  RKKVTAVHKANI +
Sbjct: 190 LKVVTREKSEQITRFAFQFAKKYGRKKVTAVHKANIQK 227


>Z81046-1|CAB02822.1|  379|Caenorhabditis elegans Hypothetical
           protein C37E2.1 protein.
          Length = 379

 Score =  119 bits (286), Expect = 1e-27
 Identities = 66/159 (41%), Positives = 101/159 (63%), Gaps = 6/159 (3%)
 Frame = +2

Query: 2   IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANK-IGLKGPLMTPV---GKG-Y 166
           I +   +PIE+EE+ ++ V     +    + A++S+  N  + LKG +        +G  
Sbjct: 64  IVKQTGIPIEFEEIFLSEVHYT--RSSSIENAVESIGRNNNVALKGAIEESAVLHTEGEL 121

Query: 167 RSLNLALRKEFDLYANVRPCKSLEGIKTLYDN-VDVVTIRENTEGEYSGIEHEIVDGVVQ 343
           + LN+ LR+  DL+ANV   K+L+GIKT +   +D V +RE TEGEYS +EHE+V GV++
Sbjct: 122 QGLNMRLRRSLDLFANVVHIKTLDGIKTRHGKQLDFVIVREQTEGEYSSLEHELVPGVIE 181

Query: 344 SIKLITEEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
            +K+ T   + R+A+FAF +A +  RKKVTAVHKANIM+
Sbjct: 182 CLKISTRTKAERIAKFAFDYATKTGRKKVTAVHKANIMK 220



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +1

Query: 463 MSDGLFLRCCRELATKYP 516
           + DGLFLR C  +A +YP
Sbjct: 221 LGDGLFLRTCEGVAKQYP 238


>U64849-1|AAC48052.3|  936|Caenorhabditis elegans Daf-12, redundant
           with protein 1 protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 346 GLHDPVDDLVLDTGILTLGVLSDRDHVNVVV 254
           G+H+P+D ++++T +  +G    RD  + VV
Sbjct: 292 GVHEPIDTILINTDVQIIGASDSRDITSSVV 322


>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = -3

Query: 513 VLGGELATTAQ-----EEAV*HXRIILALCTAVTFFLLFSLANWKANSATL---VLASSV 358
           V+GGE++   Q      +++   RI L+    ++      + NW AN   L   +++ ++
Sbjct: 33  VIGGEVSVNFQIKNHTSQSLNATRISLSQSPYISHPDAILVDNWNANVTVLGSQLVSGAI 92

Query: 357 ISLMDCTTPSTISCSI 310
           +  ++CTT  +I+C +
Sbjct: 93  LEALNCTTDGSITCPL 108


>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/76 (23%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
 Frame = -3

Query: 513 VLGGELATTAQ-----EEAV*HXRIILALCTAVTFFLLFSLANWKANSATL---VLASSV 358
           V+GGE++   Q      +++   RI L+    ++      + NW AN   L   +++ ++
Sbjct: 33  VIGGEVSVNFQIKNHTSQSLNATRISLSQSPYISHPDAILVDNWNANVTVLGSQLVSGAI 92

Query: 357 ISLMDCTTPSTISCSI 310
           +  ++CTT  +I+C +
Sbjct: 93  LEALNCTTDGSITCPL 108


>Z49073-1|CAA88886.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK970.2 protein.
          Length = 206

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -2

Query: 442 VYSRDLLPLVFSGELEGELRHS-RTGLLRDQLDGLHDPVDDLVLDTGILTL 293
           V SR  +P V   E +GE  +   + LLRD++  L  PVDD +    I  L
Sbjct: 5   VQSRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQL 55


>AC084197-25|AAK68591.1|  609|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.19 protein.
          Length = 609

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 20/75 (26%), Positives = 38/75 (50%)
 Frame = -3

Query: 450 LALCTAVTFFLLFSLANWKANSATLVLASSVISLMDCTTPSTISCSIPEYSPSVFSLIVT 271
           L  C +   FL+FSLA        +++ ++++   +    +T   SIP    + +  IVT
Sbjct: 318 LKSCASELGFLVFSLA------MAIIIFATIMYYAEKKVDATRFTSIPS---AFWYTIVT 368

Query: 270 TSTLSYSVLIPSKLL 226
            +TL Y  ++PS ++
Sbjct: 369 LTTLGYGDMVPSTIM 383


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 173 LNLALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDG 334
           LNL  R+  + Y N     S  G ++L D+  + T + N   +  G    I DG
Sbjct: 13  LNLGQRRSSEGYLNANDLLSQGGGESLLDSAGLGTSQPNLTSQRRGTNPSIFDG 66


>Z73102-2|CAB63428.1|  341|Caenorhabditis elegans Hypothetical
           protein B0035.1b protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 138 GPFKPILLAFTESIAFWGIPNLPSGP 61
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


>Z73102-1|CAA97419.1|  298|Caenorhabditis elegans Hypothetical
           protein B0035.1a protein.
          Length = 298

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 138 GPFKPILLAFTESIAFWGIPNLPSGP 61
           GP  P  + F +   F G+P +PSGP
Sbjct: 108 GPPMPTPMPFPQHFPFPGMPPMPSGP 133


>AF031843-1|AAC13679.1|  579|Caenorhabditis elegans GLY9 protein.
          Length = 579

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 412 FSGELEGELRHSRTGLLRDQLDGLHDPVDDLVL 314
           F G++    +H R GL+R +L G  + V D+++
Sbjct: 192 FGGKVRLIRKHDRHGLIRAKLAGAREAVGDIIV 224


>AC025726-19|AAK73925.1|  477|Caenorhabditis elegans Mitochondrial
           processing peptidasealpha protein 1 protein.
          Length = 477

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 226 ARSDISVQVKLLPEGQVE*SIAFTDWSHQGTLQANFIG 113
           A+  +S + + LP       I  TDW HQ   Q N IG
Sbjct: 136 AKLTVSYENQDLPNRIEAIEILLTDWIHQAAFQNNTIG 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,641,858
Number of Sequences: 27780
Number of extensions: 209398
Number of successful extensions: 781
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 779
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)