Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303E01f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 199 1e-51
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 194 4e-50
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 163 8e-41
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 163 8e-41
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 159 1e-39
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 149 8e-37
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 103 6e-23
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 39 0.002
At5g05520.1 68418.m00599 outer membrane OMP85 family protein con... 30 1.1
At3g10960.1 68416.m01321 xanthine/uracil permease family protein... 29 1.9
At5g49980.1 68418.m06189 transport inhibitor response protein, p... 24 3.0
At4g36195.1 68417.m05150 serine carboxypeptidase S28 family prot... 28 3.3
At3g28880.1 68416.m03605 ankyrin repeat family protein contains ... 28 3.3
At1g53000.1 68414.m05999 cytidylyltransferase family contains Pf... 28 3.3
At1g27290.1 68414.m03325 expressed protein 28 3.3
At5g25310.1 68418.m03003 exostosin family protein contains Pfam ... 28 4.4
At4g36630.2 68417.m05198 expressed protein 28 4.4
At4g36630.1 68417.m05199 expressed protein 28 4.4
At1g61200.1 68414.m06896 homeobox-leucine zipper protein-related... 28 4.4
At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profi... 27 5.8
At1g07500.1 68414.m00803 expressed protein ; expression supporte... 27 5.8
At4g03175.1 68417.m00434 protein kinase family protein contains ... 27 7.7
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 27 7.7
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 27 7.7
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 199 bits (485), Expect = 1e-51
Identities = 91/153 (59%), Positives = 122/153 (79%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+F A VPIEWEE V P + + ++++SV NK+GLKGP+ TP+GKG+RSLNL
Sbjct: 65 VFTTAGVPIEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNL 124
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE +LYANVRPC SL G KT YD+VD++TIRENTEGEYSG+EH++V GVV+S+K+IT
Sbjct: 125 TLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIIT 184
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
+AS RVAE+AF +A+ + R++V+A+HKANIM+
Sbjct: 185 RQASLRVAEYAFLYAKTHGRERVSAIHKANIMQ 217
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +1
Query: 466 SDGLFLRCCRELATKYPD 519
+DGLFL+CCRE+A KYP+
Sbjct: 219 TDGLFLKCCREVAEKYPE 236
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 194 bits (472), Expect = 4e-50
Identities = 91/153 (59%), Positives = 118/153 (77%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+F AA V I+W+E V P + + SV NK+GLKGP+ TP+GKG+RSLNL
Sbjct: 65 VFTAADVVIDWDEQFVGTEVDPRTNSFLTWDNLQSVLKNKVGLKGPMATPIGKGHRSLNL 124
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE +LYANVRPC SL G KT YD+VD++TIRENTEGEYSG+EH++V GVV+S+K+IT
Sbjct: 125 TLRKELNLYANVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIIT 184
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
+AS RVAE+AF +A+ + RKKV+A+HKANIM+
Sbjct: 185 RKASMRVAEYAFLYAKTHGRKKVSAIHKANIMQ 217
Score = 34.3 bits (75), Expect = 0.050
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +1
Query: 466 SDGLFLRCCRELATKYPD 519
+DGLFL+CC E+A KYP+
Sbjct: 219 TDGLFLQCCDEVAAKYPE 236
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 163 bits (395), Expect = 8e-41
Identities = 80/153 (52%), Positives = 111/153 (72%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+ EA P+ +E +V G K +P++ I+SV NK+ LKG L TPVG G SLN+
Sbjct: 60 VMEAMHAPVHFERYEVL---GNMRK--VPEEVIESVKRNKVCLKGGLATPVGGGVSSLNM 114
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE D++A++ C ++ G+ T ++NVD+V IRENTEGEYSG+EHE+V GVV+S+K+IT
Sbjct: 115 QLRKELDIFASLVNCINVPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVIT 174
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
+ S R+A +AF++A N RKKVTAVHKANIM+
Sbjct: 175 KFCSERIARYAFEYAYLNNRKKVTAVHKANIMK 207
Score = 27.1 bits (57), Expect = 7.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +1
Query: 463 MSDGLFLRCCRELATKY 513
++DGLFL CRE+A Y
Sbjct: 208 LADGLFLESCREVAKHY 224
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 163 bits (395), Expect = 8e-41
Identities = 80/153 (52%), Positives = 112/153 (73%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+ EA PI +E+ DV G + +P + ++S+ NK+ LKG L TPVG G SLN+
Sbjct: 59 VMEAMHAPIFFEKYDV---HGEMSR--VPPEVMESIRKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE DL+A++ C +L G+ T ++NVD+V IRENTEGEY+G+EHE+V GVV+S+K+IT
Sbjct: 114 QLRKELDLFASLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
+ S R+A++AF++A N RKKVTAVHKANIM+
Sbjct: 174 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMK 206
Score = 32.3 bits (70), Expect = 0.20
Identities = 12/18 (66%), Positives = 15/18 (83%)
Frame = +1
Query: 463 MSDGLFLRCCRELATKYP 516
++DGLFL CRE+A KYP
Sbjct: 207 LADGLFLESCREVAKKYP 224
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 159 bits (385), Expect = 1e-39
Identities = 78/153 (50%), Positives = 111/153 (72%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+ EA P+ +E +V D K +P+ ++S+ NK+ LKG L TPVG G SLN+
Sbjct: 59 VMEAMHAPVYFEPFEVHG----DMK-SLPEGLLESIKKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE DL+A++ C +L G+ + ++NVD+V IRENTEGEY+G+EHE+V GVV+S+K+IT
Sbjct: 114 NLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVIT 173
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
+ S R+A++AF++A N RKKVTAVHKANIM+
Sbjct: 174 KFCSERIAKYAFEYAYLNNRKKVTAVHKANIMK 206
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 463 MSDGLFLRCCRELATKYP 516
++DGLFL C+E+A KYP
Sbjct: 207 LADGLFLESCQEVAKKYP 224
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 149 bits (362), Expect = 8e-37
Identities = 76/153 (49%), Positives = 108/153 (70%)
Frame = +2
Query: 2 IFEAAKVPIEWEEVDVTAVRGPDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNL 181
+ EA P+ +E +V D K +P+ ++S+ NK+ LKG L TPVG G SLN+
Sbjct: 59 VMEAMHAPVYFEPFEVHG----DMK-SLPEGLLESIKKNKVCLKGGLKTPVGGGVSSLNV 113
Query: 182 ALRKEFDLYANVRPCKSLEGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLIT 361
LRKE DL+A++ C +L G+ + ++NVD+V IRENTEGEY+G+EHE+V GVV+S+K +
Sbjct: 114 NLRKELDLFASLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKFCS 173
Query: 362 EEASTRVAEFAFQFARENKRKKVTAVHKANIMR 460
E R+A++AF++A N RKKVTAVHKANIM+
Sbjct: 174 E----RIAKYAFEYAYLNNRKKVTAVHKANIMK 202
Score = 30.7 bits (66), Expect = 0.62
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = +1
Query: 463 MSDGLFLRCCRELATKYP 516
++DGLFL C+E+A KYP
Sbjct: 203 LADGLFLESCQEVAKKYP 220
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 103 bits (248), Expect = 6e-23
Identities = 53/118 (44%), Positives = 81/118 (68%), Gaps = 1/118 (0%)
Frame = +2
Query: 92 KAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNVDV 271
+ +DS+ NK+ L G + + G RKE DL+A++ C +L G + ++NVD+
Sbjct: 45 EVVDSIRKNKVCLNGRVNNSLCGG-------ARKELDLFASLVDCFNLNGQPSRHENVDI 97
Query: 272 VTIRENTEGEYSGIEHEIVDGVVQSIKL-ITEEASTRVAEFAFQFARENKRKKVTAVH 442
V IRENTEGEY+G EHE+V GV++S ++ +T+ S R+A++AF++A +KRKKVTAVH
Sbjct: 98 VVIRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKKVTAVH 155
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 39.1 bits (87), Expect = 0.002
Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Frame = +2
Query: 179 LALRKEFDLYANVRPCKSLEGI-------KTLYDNVDVVTIRENTEGEYSGIEHEIV--- 328
L +R++ +++AN+RP L + K + VD++ +RE T G Y G I
Sbjct: 134 LNIRRDLNVFANLRPATVLPQLVDASTLKKEVAQGVDMMIVRELTGGIYFGEPRGITINE 193
Query: 329 --DGVVQSIKLITEEASTRVAEFAFQFARENKRKKVTAVHKANIM 457
+ V + ++ R+A AF+ AR+ +R K+ +V KAN++
Sbjct: 194 NGEEVGFNTEIYAAHEIDRIARVAFETARK-RRGKLCSVDKANVL 237
>At5g05520.1 68418.m00599 outer membrane OMP85 family protein
contains Pfam profile PF01103: outer membrane protein,
OMP85 family
Length = 524
Score = 29.9 bits (64), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 113 ANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPCKSLEGIKTLY 256
A G+ G + P G GY+S + + F L N+ P SL G L+
Sbjct: 345 ALNFGIAGGITFPWGSGYKSRASCVPERFFLGGNISPVCSLGGPSALW 392
>At3g10960.1 68416.m01321 xanthine/uracil permease family protein
contains Pfam profile: PF00860 permease family
Length = 579
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = -3
Query: 270 TSTLSYSVLIPSKLLQGLTLAYKSNSFLRAKLSDL*PLPTGVIRGPFKPILLAFTESIAF 91
+ ++SY + + ++GL + S RAKL+ L P P + + LAF
Sbjct: 176 SGSISYRTALAAVFIEGLIFLFISAIGFRAKLAKLVPKPVRISSSAGIGLFLAFIGLQNN 235
Query: 90 WGIPNLPSGPLTAVT 46
GI + P T VT
Sbjct: 236 QGIGLVGYSPSTLVT 250
>At5g49980.1 68418.m06189 transport inhibitor response protein,
putative E3 ubiquitin ligase SCF complex F-box subunit;
similar to F-box containing protein TIR1 GI:13249030
from [Populus tremula x Populus tremuloides]
Length = 619
Score = 23.8 bits (49), Expect(2) = 3.0
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 132 FKPILLAFTESIAFWGIPNLPSGPLTAVTST 40
FKPI+L + FW + ++ L AV +T
Sbjct: 353 FKPIILNCHKLQVFWALDSICDEGLQAVAAT 383
Score = 23.0 bits (47), Expect(2) = 3.0
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 312 IPEYSPSVFSLIVTTSTLSYS 250
+PEY P++F + ++L++S
Sbjct: 324 MPEYLPAIFPVCANLTSLNFS 344
>At4g36195.1 68417.m05150 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 488
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = -3
Query: 294 SVFSLIVTTSTLSYSVLIPSKLLQGLTLAYK 202
S+F+++++ STLS +L P ++ GLT + K
Sbjct: 11 SIFAILLSLSTLSNGLLQPRRISHGLTESSK 41
>At3g28880.1 68416.m03605 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 762
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 65 PDGKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLYANVRPC 226
P K P S N N+ LK P++ + K S ++ +EFD Y + C
Sbjct: 613 PQPKAQPPPPLTASYNNNQRQLKHPVLETLTKIRNSTSVFFLREFDFYQSYETC 666
>At1g53000.1 68414.m05999 cytidylyltransferase family contains Pfam
profile: PF02348 cytidylyltransferase
Length = 290
Score = 28.3 bits (60), Expect = 3.3
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +2
Query: 236 EGIKTLYDNVDVVTIRENTEGEYSGIEHEIVDGVVQSIKLITEEA 370
E ++ L DVV N +G+ IE EI+DGVV++++ +T +A
Sbjct: 124 EALEKLEKKYDVVV---NIQGDEPLIEPEIIDGVVKALQ-VTPDA 164
>At1g27290.1 68414.m03325 expressed protein
Length = 142
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 456 IILALCTAVTFFLLFSLANWKANSATLVLASSVISLMDCTTPSTISCSIPEYSPS 292
+ L LC +VTFF+ F L W + + ++S + S + + SPS
Sbjct: 78 VALMLCGSVTFFIGFLLMPWVLALILVFYVAGIVSAISMVGRSILCYVLTPPSPS 132
>At5g25310.1 68418.m03003 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 334
Score = 27.9 bits (59), Expect = 4.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 82 TEFAIWTPNSCYIHFLPF 29
T+F + PN Y++FLPF
Sbjct: 42 TKFRTYDPNQAYVYFLPF 59
>At4g36630.2 68417.m05198 expressed protein
Length = 950
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 129 KPILLAFTESIAFWGIPNL 73
+ +LL+ +ESIAF G+PNL
Sbjct: 82 RELLLSLSESIAFHGLPNL 100
>At4g36630.1 68417.m05199 expressed protein
Length = 519
Score = 27.9 bits (59), Expect = 4.4
Identities = 11/19 (57%), Positives = 16/19 (84%)
Frame = -3
Query: 129 KPILLAFTESIAFWGIPNL 73
+ +LL+ +ESIAF G+PNL
Sbjct: 82 RELLLSLSESIAFHGLPNL 100
>At1g61200.1 68414.m06896 homeobox-leucine zipper protein-related
similar to SP|Q02283 Homeobox-leucine zipper protein
HAT5 (HD-ZIP protein 5) (HD-ZIP protein ATHB-1)
{Arabidopsis thaliana}
Length = 71
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/58 (25%), Positives = 24/58 (41%)
Frame = -2
Query: 466 TSXHNISFVYSRDLLPLVFSGELEGELRHSRTGLLRDQLDGLHDPVDDLVLDTGILTL 293
++ H + + R+L P+V G + T R L DP DD D +L +
Sbjct: 11 SASHGNNMFFFRNLNPVVQGGGTRSMMNKEETSKRRPFFSSLEDPYDDDYYDDHLLKI 68
>At5g19910.1 68418.m02369 SOH1 family protein contains Pfam profile:
PF05669 SOH1
Length = 196
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 97 RFLGNTEFAIWTPNSCYIHFLPFDRYF 17
RFL EF N YIH+L +RYF
Sbjct: 31 RFLLELEFIQCLANPTYIHYLAQNRYF 57
>At1g07500.1 68414.m00803 expressed protein ; expression supported
by MPSS
Length = 74
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 348 MDCTTPSTISCSIPEYSP 295
M CTTP+ C IP Y P
Sbjct: 20 MGCTTPTRDDCRIPAYPP 37
>At4g03175.1 68417.m00434 protein kinase family protein contains
similarity to Swiss-Prot:P51566 protein kinase AFC1
[Arabidopsis thaliana]
Length = 139
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 71 GKFGIPQKAIDSVNANKIGLKGPLMTPVGKGYRSLNLALRKEFDLY 208
G+ P +A+ + A + + GP+ T + K + + KE+DLY
Sbjct: 31 GEVLFPNEAVAMILARIVAVLGPIETEMLKKGQETHKYFTKEYDLY 76
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 161 GYRSLNLALRKEFDLYANVRPCKSLEGIKTLYDNV 265
G R NL LR+E +++AN++ K L IK ++ +
Sbjct: 1675 GLRDNNLRLRRELEMFANLKG-KLLTDIKNGFERI 1708
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -2
Query: 361 RDQLDGLHDPVDDLVLDTGILT 296
RD++ L DP DD V+ TG++T
Sbjct: 633 RDEVIQLRDPDDDTVVKTGLVT 654
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,215,313
Number of Sequences: 28952
Number of extensions: 201095
Number of successful extensions: 698
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -