Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D12f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...   114   9e-27
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    30   0.24 
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   1.7  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.9  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.0  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   9.0  

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score =  114 bits (274), Expect = 9e-27
 Identities = 57/102 (55%), Positives = 74/102 (72%)
 Frame = -3

Query: 375 KSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLW 196
           KSAIN+VVTR+YT+++HKRL+GV FKKRAPRAIKEI  FA+K M T ++RVD  LNK +W
Sbjct: 6   KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVW 65

Query: 195 SKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIK 70
            +G+RNVP          R+D++D A  L+T V  V VA+ K
Sbjct: 66  KRGIRNVPHRLRLRLSRKRSDEDDKA--LYTYVQAVDVANPK 105


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 21/72 (29%), Positives = 31/72 (43%)
 Frame = +2

Query: 227 RMSGVPICFSANFRISLIALGARFLNPTP*SRLCKLTVYSRVTTSFMADLPFLSPLGLAI 406
           R+  +P+ F    R+    +G   L PT   R+ K   Y    TS M  L  +S LGL +
Sbjct: 45  RLIHIPLSFLQQPRVIAEIIGGIVLGPTVMGRIPKFLDYI-FPTSSMGPLNLVSNLGLVL 103

Query: 407 VILSFVYRIQLR 442
            +      + LR
Sbjct: 104 FLFVIGMEVDLR 115


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 202 EFV*ASVYSNVRSSHLFFSELSDFFDCSWGTLFKSNTMKSF 324
           E V  S+Y N R  +L ++       CSW +  +S+T  S+
Sbjct: 68  EAVRDSIYQNKRGMYLAYAFGIAILACSWASAIQSSTTYSY 108


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 26  GVYSWLASTFSVCKPLID 79
           GV  WLAST+S C  +++
Sbjct: 464 GVVCWLASTYSFCDGIVN 481


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   FFFFFYTKGVYSWLASTFSVCKPLID 79
           FFF +Y K    ++++ FS+ K L++
Sbjct: 74  FFFVYYCKQALEFISTVFSIIKFLLN 99


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 366 INEVVTREYTVNLHKRLHGVGFKKRAPRAIKEI 268
           INE VT +Y  N+   + G+G  ++A   +K+I
Sbjct: 860 INEAVTNKYEANILPYIAGLG-PRKADYVLKKI 891


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +2

Query: 182 LTPL-DQRNLFKRVSTRMSGVPICFSANFRISLIALGARFLN 304
           L P+ DQ  L  R+  R SG  +C+S  F   L      + N
Sbjct: 22  LAPMVDQSELPWRILARRSGADLCYSPMFHSRLFGESEDYRN 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,760
Number of Sequences: 5004
Number of extensions: 39882
Number of successful extensions: 69
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)