Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D12f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0140 + 12255418-12255512,12257514-12257793                      133   7e-32
08_02_1181 - 24985963-24986242,24987109-24987197                      132   2e-31
02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649    112   1e-25
06_03_0590 + 22574985-22578018,22578125-22578469,22579171-225792...    29   1.7  
08_01_0292 - 2359134-2359706                                           29   3.0  
05_07_0169 + 28126467-28127001,28127105-28127286                       28   5.2  
01_06_0668 + 31058497-31059510,31059609-31059676,31060189-310602...    27   9.1  

>06_02_0140 + 12255418-12255512,12257514-12257793
          Length = 124

 Score =  133 bits (322), Expect = 7e-32
 Identities = 66/118 (55%), Positives = 85/118 (72%), Gaps = 2/118 (1%)
 Frame = -3

Query: 393 KGERKGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTR 214
           K +R G +  +EVVTREYT+NLHKRLHG  FKK+AP AIKEIRKFA+K MGT D+RVD +
Sbjct: 4   KKQRPGGARKDEVVTREYTINLHKRLHGCTFKKKAPNAIKEIRKFAQKAMGTIDVRVDVK 63

Query: 213 LNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 46
           LNK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KGL T+ V+
Sbjct: 64  LNKHIWSSGIRSVPRRVRVRIARRRNDEEDAKEELYSLVTVAEVPQEGLKGLGTKLVE 121


>08_02_1181 - 24985963-24986242,24987109-24987197
          Length = 122

 Score =  132 bits (318), Expect = 2e-31
 Identities = 67/117 (57%), Positives = 84/117 (71%), Gaps = 3/117 (2%)
 Frame = -3

Query: 387 ERKGKSAINE-VVTREYTVNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRL 211
           E+KG +A  E VVTREYT+NLHKRLH   FKK+AP AIKEIRKFA+K MGT D+RVD +L
Sbjct: 3   EKKGGAARKEEVVTREYTINLHKRLHSCTFKKKAPNAIKEIRKFAQKAMGTTDVRVDVKL 62

Query: 210 NKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGLQTENVD 46
           NK +WS G+R+VP          RND+ED+  +L++LVT   VP   +KGL T+ VD
Sbjct: 63  NKHIWSSGIRSVPRRVRVRIARKRNDEEDAKEELYSLVTVAEVPPEGLKGLGTKVVD 119


>02_05_0532 - 29814199-29814478,29814922-29814969,29815558-29815649
          Length = 139

 Score =  112 bits (270), Expect = 1e-25
 Identities = 61/124 (49%), Positives = 80/124 (64%), Gaps = 18/124 (14%)
 Frame = -3

Query: 363 NEVVTREYTVNLHKRLHGV----------------GFKKRAPRAIKEIRKFAEKQMGTPD 232
           +EVVTREYT+NLHKRLHG                  FKK+AP AIKEIRKFA+K MGT D
Sbjct: 13  DEVVTREYTINLHKRLHGCIVCSNDLIHYAPDIVSTFKKKAPNAIKEIRKFAQKAMGTTD 72

Query: 231 IRVDTRLNKFLWSKGVRNVPFXXXXXXXXXRNDDEDSAHKLFTLVTY--VPVASIKGLQT 58
           IR+D +LNK +W+ G+R+VP          RND+ED+  +L++LVT   +P   +KGL T
Sbjct: 73  IRIDVKLNKAIWTNGIRSVPRRVRVRISRKRNDEEDAKEELYSLVTVAEIPAEGLKGLGT 132

Query: 57  ENVD 46
           + V+
Sbjct: 133 KVVE 136


>06_03_0590 +
           22574985-22578018,22578125-22578469,22579171-22579217,
           22579450-22579573,22579622-22579686
          Length = 1204

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 15/32 (46%), Positives = 22/32 (68%)
 Frame = +2

Query: 398 LAIVILSFVYRIQLRKELSECQGSPSCRIRHE 493
           +AI+ILS+V RI  RKE+   Q +P C++  E
Sbjct: 780 VAIIILSYVVRIYRRKEM---QANPHCQLISE 808


>08_01_0292 - 2359134-2359706
          Length = 190

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 365 MADLPFLSPLGLAIVILSFVYRIQLRKELSECQGSPSCRIRHEASCR 505
           M  +PFLSPL +A+ ++  V       E + C G+PS  +  E++CR
Sbjct: 1   MNTIPFLSPLLVAVSLI--VAGAGAGDETTTCPGAPSMTV--ESACR 43


>05_07_0169 + 28126467-28127001,28127105-28127286
          Length = 238

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 320 RLCKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKELSEC 460
           R+CK   Y +    +  D     PLGL  ++++     QLR+EL++C
Sbjct: 135 RVCK--TYGKTIHFWQVDRGDALPLGLPQIMMALTRDGQLRQELAKC 179


>01_06_0668 +
           31058497-31059510,31059609-31059676,31060189-31060270,
           31060339-31060431,31060516-31060668,31060900-31060968,
           31061091-31061184,31061594-31061677,31062133-31062221,
           31062340-31062456,31062567-31062707,31062823-31063005
          Length = 728

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -3

Query: 336 VNLHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPD 232
           +N+   ++G GF   A   + E+ K A KQ+  PD
Sbjct: 441 LNVDSAVYGAGFYASATPQLDELLKEASKQVQNPD 475


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,842,841
Number of Sequences: 37544
Number of extensions: 239186
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)