Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D12f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   1e-08
SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)                  41   5e-04
SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.4  
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)           27   7.1  
SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)                 27   9.4  
SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_50019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 849

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 24/38 (63%), Positives = 30/38 (78%)
 Frame = -3

Query: 405 MAKPKGERKGKSAINEVVTREYTVNLHKRLHGVGFKKR 292
           M K   ++KG+SAINEVVTREYT+NLHKR+HG+    R
Sbjct: 769 MVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYR 806



 Score = 54.0 bits (124), Expect = 7e-08
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
 Frame = -3

Query: 330  LHKRLHGVGFKKRAPRAIKEIRKFAEKQMGTPDIRVDTRLNKFLWSKGVR--NVPFXXXX 157
            +H    G  F      + K ++K  +K+  +    V TR       K +   NVP+    
Sbjct: 750  IHNAARGCNFFLLLDFSFKMVKKTDKKKGRSAINEVVTREYTINLHKRIHGMNVPYRVRV 809

Query: 156  XXXXXRNDDEDSAHKLFTLVTYVPVASIKGLQTENVDASQ 37
                 RN+DEDS HKL+TLVT V V++ KGLQT+ V++ +
Sbjct: 810  RLARKRNEDEDSPHKLYTLVTSVAVSTFKGLQTQKVESEE 849


>SB_42441| Best HMM Match : DUF1484 (HMM E-Value=0.48)
          Length = 776

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = -3

Query: 180 NVPFXXXXXXXXXRNDDEDSAHKLFTLVTYVPVASIKGLQTE 55
           NVP+         RN+DEDS HKL+TLVT V V++ K L  E
Sbjct: 2   NVPYRVRVRLARKRNEDEDSPHKLYTLVTSVAVSTFKVLADE 43


>SB_33029| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 927

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 185 TPLDQRNLFKRVSTRMSGVPICFSANF 265
           TP D  N   R  T M G+P+C +A F
Sbjct: 285 TPEDTPNDSLRTKTVMFGIPVCMTARF 311


>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
          Length = 479

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -1

Query: 482 FGTRDFLDILTVLF*VEFGTRNLR*QWLNPKVKEKANQP*TKLLPVNIQLIYTNDFMVLD 303
           F   DF+++L ++     G   LR   +    +E  + P  K L   ++  Y  DF +LD
Sbjct: 311 FDVMDFINLLRLILEYREGVDMLREAGIEMGYEEDLSTPNEKFLGKLVKQKYDTDFFILD 370


>SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
          Length = 353

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 22/66 (33%), Positives = 34/66 (51%)
 Frame = +2

Query: 323 LCKLTVYSRVTTSFMADLPFLSPLGLAIVILSFVYRIQLRKELSECQGSPSCRIRHEASC 502
           LCK    +   T  +  +P L+ + ++I IL F++R    K L  C G  SC I   ++ 
Sbjct: 188 LCK--ALNLAITIVVIFIPALTLVVMSIRILMFLHR----KRLQSCPGQSSCSI--ISTL 239

Query: 503 RCYELS 520
           R Y+LS
Sbjct: 240 RHYKLS 245


>SB_43314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +2

Query: 383 LSPLGLAIVILSFVYRIQLRKELSECQGSPS 475
           L+ LG+ ++I+  V  ++  ++ SEC+GS S
Sbjct: 16  LALLGIVLLIVGIVLIVRSNEKASECRGSTS 46


>SB_37851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 269

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 381 KGKSAINEVVTREYTVNLHKRLHGVGFKKRAPRAIKEIRK 262
           K K  INEV+T  Y     + L      KR  R IKE+ +
Sbjct: 213 KNKPEINEVITPRYPPGEGEVLDDASIIKRYKRQIKELEE 252


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 283 SNQRNPKVR*KTDGNSGHSSRHSLKQIPLV*GSQKCSLPCPCEAFT 146
           S ++   ++   D   GH  +  ++Q PL     K  LPC    FT
Sbjct: 349 SKKKKQGIQGSADAEQGHHEQSLVRQRPLFAPLPKLRLPCQYNPFT 394


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,343,963
Number of Sequences: 59808
Number of extensions: 297483
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)