Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D10f
(495 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0) 174 3e-44
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.074
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5) 33 0.098
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45) 31 0.39
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 2.1
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95) 29 2.1
SB_14427| Best HMM Match : Cadherin (HMM E-Value=0) 29 2.1
SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18) 29 2.8
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8) 28 3.7
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15) 28 3.7
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 28 3.7
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08) 28 4.9
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29) 28 4.9
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 28 4.9
SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 27 6.4
>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
Length = 299
Score = 174 bits (424), Expect = 3e-44
Identities = 80/106 (75%), Positives = 90/106 (84%)
Frame = +2
Query: 89 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 268
ARP+++V++E E+ LP VFKAPIRPDLVN VH +++KN RQPY V+K AGHQT
Sbjct: 2 ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNKLAGHQT 59
Query: 269 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPW 406
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK W
Sbjct: 60 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTW 105
>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 33.9 bits (74), Expect = 0.074
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQPP 249
Y +HP T+ YH H R H Q+P + H + Q P
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTHRYQYQHP 268
Score = 32.7 bits (71), Expect = 0.17
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 255
Y +HP T+ YHH H + ++ Q+P + H + Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 353 HPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQP 252
HP T+ YH H R H Q+P + H + P
Sbjct: 406 HPQVTHRYHQHPQLTH-RYHHQHPQVIHRYHQHP 438
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = -2
Query: 362 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
Y +HP T+ YH R Q+P + H
Sbjct: 242 YHQHPQVTHRYHQQHPQVTHRYQYQHPQVTH 272
>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
Length = 612
Score = 33.5 bits (73), Expect = 0.098
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 264
HH CY H Y Y+ H H + R H YP +H++
Sbjct: 20 HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH CY RH + Y HH H
Sbjct: 25 YCHHRYCYYRHHHYCW-YRHHYH 46
>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
Length = 453
Score = 31.5 bits (68), Expect = 0.39
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HH RH R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351
>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT R+HPD H HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/35 (25%), Positives = 14/35 (40%)
Frame = -2
Query: 389 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 285
R + HH + H + +HHH H H +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243
>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
Length = 1080
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 382
T +E +G ++ R PR RGGG G G G RGGR
Sbjct: 983 TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022
>SB_14427| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2325
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 185 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARI 310
D+ NDV ++++ + PY + H T E TG+ +A++
Sbjct: 2034 DVTNDVTINVTDVNEAPYDIRLVPSHVTVKEDIRTGQCIAQV 2075
>SB_12491| Best HMM Match : rve (HMM E-Value=1.6e-18)
Length = 1106
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 388 RPHEALAALAPSRQPPTAESGLGGSRCCYRRPNAR 492
R H AL A + P T SG GG R RR N R
Sbjct: 265 RDHTALKAGLSALAPVTDPSGHGGERLAERRHNGR 299
>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
Length = 193
Score = 28.3 bits (60), Expect = 3.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH YR H + Y +HHH
Sbjct: 96 HHHQHYRHHRHQHYRHHHH 114
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 28.3 bits (60), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 156 GRGLAAPCTVSLFSEYTDTKGRATDRLI 73
G+GL C+V+L S Y T+G+ RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190
>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
Length = 715
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 179 RPDLVNDVHVSMSKNSRQPYC-VSKEAGHQTSAESWGTGRAV 301
RP +SM K R+PY + +E GH+ S T R V
Sbjct: 156 RPGCDTHEKISMEKRKREPYLELIRETGHERQRRSVSTERNV 197
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGH 315
Y HH +RR R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255
>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
Length = 839
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHH 321
HH + RH R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588
>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
Length = 1779
Score = 27.9 bits (59), Expect = 4.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGH 315
HH + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360
>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 736
Score = 27.9 bits (59), Expect = 4.9
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 365 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 270
CY + + + YHHH H H Q+ H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277
Score = 27.5 bits (58), Expect = 6.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 383 YVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQ 288
Y HH + +H + +HHH H H Q
Sbjct: 257 YHHHHHHHHQHNHHQHHHHHHHHHHNHHHHHQ 288
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 27.9 bits (59), Expect = 4.9
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 397 EALAALAPSRQPPTAESGLGGSRCCYRRPNAR 492
EA A S + T SG GG R RRPN R
Sbjct: 357 EARLAFPDSLKTVTDPSGHGGERLAERRPNGR 388
>SB_59069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHA 312
TY H DT +HPD H HA
Sbjct: 323 TYTHQDTQMHKHPDTQMYVHAPRHA 347
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.5 bits (58), Expect = 6.4
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Frame = +2
Query: 224 SRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAF-GNMCRGGRMFAP 394
SRQPY + GH G G P +RGG + G G G G R AP
Sbjct: 110 SRQPYGPGRGRGHPNGRPMQGRGMQ----PGIRGGMMPQQGPGVRPGFPPAGSRQMAP 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,642,133
Number of Sequences: 59808
Number of extensions: 297733
Number of successful extensions: 914
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1062812967
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -