Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D10f
(495 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 149 1e-36
Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical pr... 31 0.46
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 29 2.4
AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever sho... 27 5.7
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 27 5.7
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho... 27 5.7
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 7.5
Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical pr... 27 9.9
Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical p... 27 9.9
Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical p... 27 9.9
U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical p... 27 9.9
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 27 9.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 27 9.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 27 9.9
AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical ... 27 9.9
AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 149 bits (360), Expect = 1e-36
Identities = 71/104 (68%), Positives = 81/104 (77%)
Frame = +2
Query: 89 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 268
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 269 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK 400
SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLK 105
>Z69302-6|CAL36504.1| 472|Caenorhabditis elegans Hypothetical
protein F40F8.11 protein.
Length = 472
Score = 31.1 bits (67), Expect = 0.46
Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Frame = +2
Query: 221 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFA 391
N R V K H+ SW T + R GGG R SG G RGGR
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196
Query: 392 PTKP 403
KP
Sbjct: 197 APKP 200
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.7 bits (61), Expect = 2.4
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 377 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 294
HHD +++H + ++ HHHGH G H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145
>AC024813-3|AAK27881.1| 461|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform b protein.
Length = 461
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 92 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 265
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 266 TSAESWGTGRAVARIPRVRGGGTHRSGQG 352
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 92 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 265
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 266 TSAESWGTGRAVARIPRVRGGGTHRSGQG 352
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform a protein.
Length = 1241
Score = 27.5 bits (58), Expect = 5.7
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +2
Query: 92 RPLVSVYSEKSETVQGAAKPLPFVFKA--PIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQ 265
RP + +Y G+ K L + P RP+ +N +MS NSR+ + +
Sbjct: 19 RPEIQIYRPGMLRQGGSTKSLSSTNEEARPPRPEKLNTTTTTMSGNSRRRSNDTDSVTSR 78
Query: 266 TSAESWGTGRAVARIPRVRGGGTHRSGQG 352
+ S V RGGG +R +G
Sbjct: 79 GGSGSTTPDANVINAMNERGGGRNRFEKG 107
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 74 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 247
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>Z81086-9|CAD30440.1| 75|Caenorhabditis elegans Hypothetical
protein F53B6.9 protein.
Length = 75
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 386 TYVHHDTCYRRHPDRTYEYHHHGHAEF 306
TY HH Y ++E+HHH H +
Sbjct: 20 TYAHHSHSY----SHSHEHHHHHHGGY 42
>Z70718-11|CAA94680.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 180 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 67
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>Z68301-10|CAA92629.1| 590|Caenorhabditis elegans Hypothetical
protein W01B6.9 protein.
Length = 590
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -1
Query: 180 RMGALNTNGRGLAAPCTVSLFSEYT-DTKGRATDRLISL 67
+ G LN NGR A F++YT T R TD SL
Sbjct: 7 KTGGLNLNGRASIAITPTKRFTDYTGSTSVRKTDARPSL 45
>U58748-10|AAB52970.2| 701|Caenorhabditis elegans Hypothetical
protein ZK180.6 protein.
Length = 701
Score = 26.6 bits (56), Expect = 9.9
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +2
Query: 308 IPRVRGGGTHRSGQGAFGNMCRGG 379
+P GGG S Q A GN C GG
Sbjct: 26 LPGAGGGGCCSSAQPACGNPCGGG 49
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3410 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3445
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 188 GPDGWAP*TRTGGAWLHPAPSHSSLSTPTLKVGLPI 81
GPDG T G +++PA + PT K G P+
Sbjct: 3455 GPDGQVLPTDDSGNYIYPAVGPDGQAFPTDKSGKPL 3490
>AF067624-4|AAM15592.1| 644|Caenorhabditis elegans Hypothetical
protein M01B12.4b protein.
Length = 644
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 189 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 76
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 568 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 607
>AF067624-2|AAC17562.3| 634|Caenorhabditis elegans Hypothetical
protein M01B12.4a protein.
Length = 634
Score = 26.6 bits (56), Expect = 9.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 189 RSGRMGALNTNGRGLAAPCTVSLFSEYTDTK--GRATDRL 76
R R+ A+ RG+A+P T +L D K GRA D L
Sbjct: 558 RKSRLAAILAKSRGMASPMTNTLPPTADDIKESGRANDVL 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,492,481
Number of Sequences: 27780
Number of extensions: 214266
Number of successful extensions: 735
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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