Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D09f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.) 123 1e-28
SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096) 29 1.8
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 29 2.3
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 28 5.4
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 123 bits (296), Expect = 1e-28
Identities = 58/94 (61%), Positives = 73/94 (77%), Gaps = 3/94 (3%)
Frame = +2
Query: 143 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 313
PF DA K S VQ ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541
Query: 314 GTVVEHPEYGEVLQLQGDQRENICQWLTKFRLSE 415
GTVV+HPEYGE +QLQGDQR + ++L + L++
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAK 575
>SB_51378| Best HMM Match : PAN (HMM E-Value=0.00096)
Length = 279
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 487 TMLSVDMLCFSRAA*KPCTLSCSGFTKPEFGEPLANILSLVA-LKLQHLAV 338
T+L + F+R+A +PC S + ++ + LA I+ +A ++ +H V
Sbjct: 129 TVLDIQWALFARSAQEPCPHSANSICTAQYPQTLAKIIEKIASMQTRHYLV 179
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +2
Query: 233 LTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKFRLS 412
L +Q + S D K +VR + C+ VV G + L GD +++I WL +S
Sbjct: 65 LRFLQKVCSGVD-KSLVRGIGFDATCSLAVVGQDGRGLSVSLSGDPQKDIIMWLDHRAIS 123
Query: 413 EA 418
+A
Sbjct: 124 QA 125
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +1
Query: 82 VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 252
VE + V+ + ES +IR RC+Q +R+ F RP+P T+ D RP
Sbjct: 49 VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -3
Query: 327 STTVPLHA---NSFLHART--IFFRSYSEERPCTVVSVLRPFRC 211
STTV +H N+ LH R I+ R+Y+ + P +S P RC
Sbjct: 254 STTVAVHKDARNADLHTRVTLIYRRAYNADLPTRTMSEGAPMRC 297
>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -2
Query: 139 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 44
+C+E +D H ++ + FQ L T Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212
>SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -3
Query: 249 PCTVVSVLRPFRCWIRTWTKP 187
P + + + P +CW R W KP
Sbjct: 161 PRSRIPLKNPLKCWYRNWLKP 181
>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 159 IASANGSNVLRFWMDIRLNVGSLCFNETLRYYALNNITVTDNALL 25
+A +G W D+ SL FN +L AL ++TV D L
Sbjct: 734 VAVLDGWGFGTIWCDVLAVTVSLSFNASLVTLALQSVTVNDTRAL 778
>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +2
Query: 182 QDGLVHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNG 316
QDGLV R+ Q NGR T + L YD +++ K+ G
Sbjct: 760 QDGLVSYRVSQGNGRSDGTGLGDLRDVGYDGRRLAYGTKRGVLSGG 805
>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 298 LLACPHDLLQVIFRGKALHRSQ 233
++ C H+LL++ RGK H+SQ
Sbjct: 518 VIQCLHELLELTLRGKQDHQSQ 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,670,191
Number of Sequences: 59808
Number of extensions: 343275
Number of successful extensions: 2428
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2428
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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