Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D09f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58762-4|AAK39303.1| 109|Caenorhabditis elegans Hypothetical pr... 120 6e-28
Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical pr... 32 0.29
AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical ... 29 2.0
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 4.7
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr... 28 4.7
AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical ... 28 4.7
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical pr... 27 8.1
Z81564-11|CAB04576.1| 436|Caenorhabditis elegans Hypothetical p... 27 8.1
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 27 8.1
>U58762-4|AAK39303.1| 109|Caenorhabditis elegans Hypothetical
protein T27F7.3b protein.
Length = 109
Score = 120 bits (289), Expect = 6e-28
Identities = 59/98 (60%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Frame = +2
Query: 113 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 286
MSI NLN P ADA + +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1 MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57
Query: 287 ACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTK 400
KK+ +CNGT+VEHPEYGEV+QL GDQR+ + +L K
Sbjct: 58 YLKKKHSCNGTIVEHPEYGEVIQLTGDQRDKVKDFLIK 95
>Z79600-6|CAB01879.2| 529|Caenorhabditis elegans Hypothetical
protein F59C6.8 protein.
Length = 529
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Frame = +2
Query: 98 PTFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 244
PTFNR I N FDP+ +A K + + DGL + + + R + T+ T+
Sbjct: 397 PTFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447
>AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical
protein Y71F9B.3 protein.
Length = 183
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 206 IQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENIC 385
++Q+ G K L V G+ L ++ + CN +P Y + ++ +E+
Sbjct: 31 VEQKTGVKRLHLVLGVVGLQALY-LIFGHSAQLVCNFMGFVYPAYMSIKAIESSNKEDDT 89
Query: 386 QWLT 397
QWLT
Sbjct: 90 QWLT 93
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 339 TARCCSFRATSERIFASGSPNSGLVKPEQLKV 434
++RC F AT + G+P L+ PE LK+
Sbjct: 901 SSRCAQFLATYREKCSEGAPLGQLILPESLKL 932
>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
C34G6.1 protein.
Length = 1768
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -3
Query: 312 LHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCWIRTWTKP 187
L +SF+ A T+F RS E+RP V + + + + ++P
Sbjct: 1417 LDKDSFIQAITVFIRSLVEQRPAWVSPLAKTMEEYANSESEP 1458
>AF068710-3|ABO16459.1| 189|Caenorhabditis elegans Hypothetical
protein T06A1.4 protein.
Length = 189
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 71 RSVSLKQRDPTFNRMSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQG 250
++V + DP F ++ Q L FD A++ DVQ ++ + R+ ++ + G
Sbjct: 83 QTVDMNCSDPGFEAIAAQYLKVFDDVITAVEEKPGDVQTACDRLQAVGKMHRQKVSGMDG 142
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical
protein C10C6.1 protein.
Length = 1565
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 357 SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 208
S S+S G + P + S +H+ TI R+YS ++++ ++ R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193
>Z81568-9|CAB04599.2| 386|Caenorhabditis elegans Hypothetical
protein K08E3.7 protein.
Length = 386
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -2
Query: 328 LHDRTVARELLLACPHDLLQVIFRGKALHRSQRLTPVSL 212
+ D T E L P D L+V+F GK L +S + +SL
Sbjct: 30 IEDLTKDVEKLTEIPSDELEVVFCGKKLSKSTIMRDLSL 68
>Z81564-11|CAB04576.1| 436|Caenorhabditis elegans Hypothetical
protein K05C4.11 protein.
Length = 436
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 209 QQRNGRKTL-TTVQGLSSEYDLKKIVRACKKEFACNG 316
++R G K + T V+GL E D +CK +F C+G
Sbjct: 290 EERIGFKVVWTAVEGLIGEGDESVNGNSCKDQFMCHG 326
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 27.1 bits (57), Expect = 8.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 357 SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVVSVLRPFRCW 208
S S+S G + P + S +H+ TI R+YS ++++ ++ R W
Sbjct: 144 STSSSHNFGAAGAGPSSSGSSVHSGTITLRTYSARNGSSLMAPVQDTRRW 193
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,901,699
Number of Sequences: 27780
Number of extensions: 240678
Number of successful extensions: 705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -