Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   142   1e-34
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   139   1e-33
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   130   4e-31
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.3  
At5g36210.1 68418.m04365 expressed protein                             27   5.8  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   7.7  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  142 bits (344), Expect = 1e-34
 Identities = 77/160 (48%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 186 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS---- 350
           AW H+YW+LTNEGI++LR +L+LP EIVPATLK+  +      G  G RP  P R     
Sbjct: 61  AWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGER 120

Query: 351 -AEDRSAYRRTPAAPGVAPHDKKADVGPGSADLEFKGGYG 467
              DR  YR  P + G   +  KA   P      F+GG G
Sbjct: 121 RFGDRDGYRGGPKSGG--EYGDKAG-APADYQPGFRGGAG 157


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  139 bits (336), Expect = 1e-33
 Identities = 76/157 (48%), Positives = 99/157 (63%), Gaps = 3/157 (1%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 186 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAED 359
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP G R   P RS  D
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGD 119

Query: 360 RSAY-RRTPAAPGVAPHDKKADVGPGSADLEFKGGYG 467
           R  +  R     G    D+K    P      F+GG G
Sbjct: 120 RPRFGDRDGYRGGPRGGDEKGG-APADFQPSFQGGGG 155


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  130 bits (315), Expect = 4e-31
 Identities = 69/138 (50%), Positives = 89/138 (64%), Gaps = 8/138 (5%)
 Frame = +3

Query: 6   MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 185
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 186 AWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA-- 353
           AW H+YW+LTNEGIE+LR +L+LP ++VPATLK+S +       GP G R   P      
Sbjct: 60  AWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGD 119

Query: 354 ----EDRSAYRRTPAAPG 395
                DR  YR  P A G
Sbjct: 120 RPRFGDRDGYRAGPRAGG 137


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 93  PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 182
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 101
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -1

Query: 98  LRCMIVFFGHHDSLFKEVLINSNTVLFGH 12
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,839,080
Number of Sequences: 28952
Number of extensions: 209864
Number of successful extensions: 574
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)