Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 51 9e-08
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual 48 1e-06
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 47 1e-06
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 35 0.006
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 34 0.015
SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom... 32 0.060
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy... 31 0.14
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R... 30 0.18
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 29 0.32
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 29 0.32
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 29 0.56
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 9.0
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 25 9.0
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 51.2 bits (117), Expect = 9e-08
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Frame = +1
Query: 46 MSELVWGIKNGDIDQVKDIIENKKIDVNASID-GRVPLHYAADYGQTTVLNYLLNKGADP 222
M L G++D VK++I ++KIDVNA+ + G LH+AA Q + +LL GAD
Sbjct: 1 MGSLFLAASQGELDTVKNLISSEKIDVNATDEGGATALHWAALNQQIPICKFLLEHGADV 60
Query: 223 NVVDKHGISVLLAAI-WEGHTDCVKT---LLKNGASKNGKTPDGTPYLEAA 363
N + G + A I W VKT L+++GA K G L A
Sbjct: 61 NAI---GGDLQAAPIHWAAKRGSVKTVHYLVQHGADPLLKDKQGFNCLHLA 108
Score = 43.2 bits (97), Expect = 2e-05
Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Frame = +1
Query: 55 LVWGIKNGDIDQVKDIIENKKIDVNASIDGRV---PLHYAADYGQTTVLNYLLNKGADPN 225
L W N I K ++E+ DVNA I G + P+H+AA G ++YL+ GADP
Sbjct: 38 LHWAALNQQIPICKFLLEHGA-DVNA-IGGDLQAAPIHWAAKRGSVKTVHYLVQHGADPL 95
Query: 226 VVDKHGISVLLAAI 267
+ DK G + L A+
Sbjct: 96 LKDKQGFNCLHLAV 109
Score = 35.9 bits (79), Expect = 0.004
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 151 PLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNG 312
PL +A+ +G + N LL GAD D+ ++ L +I G+ C+K +LK G
Sbjct: 137 PLMWASYHGNEPITNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMKLILKEG 190
>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 234
Score = 47.6 bits (108), Expect = 1e-06
Identities = 26/74 (35%), Positives = 39/74 (52%)
Frame = +1
Query: 136 IDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 315
+ G+ PLH AA G+ V+ YL+++ A N D +G + L A+ EGH D L++ GA
Sbjct: 139 LQGQTPLHRAAAVGKIQVVKYLISQRAPLNTSDSYGFTPLHFALAEGHPDVGVELVRAGA 198
Query: 316 SKNGKTPDGTPYLE 357
K + LE
Sbjct: 199 DTLRKDSENHTALE 212
Score = 31.9 bits (69), Expect = 0.060
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Frame = +1
Query: 85 DQVKDIIENKKIDVNA-SIDGRVPLHYAADYGQTTVLNYLLNK-GADPNVVDKHGISVLL 258
+ V+ I+N +NA D R PLH+A G+ + +LL + P+ D+ G + L+
Sbjct: 17 EYVEQAIQNDPNSLNAVDDDKRTPLHWACSVGKVNTIYFLLKQPNIKPDEKDEAGWTPLM 76
Query: 259 AAI 267
+I
Sbjct: 77 ISI 79
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 47.2 bits (107), Expect = 1e-06
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +1
Query: 163 AADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDG 342
AA G+T V+ L+ G PN D++G + + AA+ GH+D +K L++ G N + DG
Sbjct: 11 AASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRDQDG 70
Query: 343 TPYLEAAEK 369
L EK
Sbjct: 71 ETPLFVCEK 79
Score = 35.1 bits (77), Expect = 0.006
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 58 VW-GIKNGDIDQVKDIIENKKIDVNASIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVD 234
+W +G D V +++ A +G P+H A YG + +L L+ +G D N+ D
Sbjct: 8 IWIAASDGKTDVVLKHLDSGISPNAADENGYTPIHAAVSYGHSDLLKILVERGGDINIRD 67
Query: 235 KHG 243
+ G
Sbjct: 68 QDG 70
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 35.1 bits (77), Expect = 0.006
Identities = 22/58 (37%), Positives = 25/58 (43%)
Frame = +1
Query: 142 GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAIWEGHTDCVKTLLKNGA 315
GR LH A G + +L N G D N D G + L A H D LL NGA
Sbjct: 862 GRSLLHLTAACGLSNASTFLCNAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGA 919
Score = 31.9 bits (69), Expect = 0.060
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 109 NKKIDVNA-SIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 243
N DVN G PLHYA+ Y + LL+ GA P+V+ G
Sbjct: 883 NAGCDVNKRDALGYTPLHYASLYDHKDICVNLLSNGAKPDVIGASG 928
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 33.9 bits (74), Expect = 0.015
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Frame = +1
Query: 55 LVWGIKNGDIDQVKDIIENKKIDVNASIDGRVP-LHYAADYGQ-TTVLNYLLNKGADPNV 228
L IK ++ + ++ + + ++ G VP L G ++ L+ G +PN
Sbjct: 303 LTLAIKGNHVEALHALLSAQDKETTSTKPGPVPPLVLTCCVGDYDLIVEELILAGFNPNE 362
Query: 229 VDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGK 330
VD + L A+ +CVK LLK GA+ + +
Sbjct: 363 VDASSNTALHTAVRYNRPECVKMLLKLGANPSAR 396
>SPBP16F5.05c |||ribosome biogenesis protein
Nop8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 146
Score = 31.9 bits (69), Expect = 0.060
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +1
Query: 73 NGDIDQVKDIIE--NKKIDVNASID-GRVPLHYAADYGQTTVLNYLLNKGADPNV 228
NG I V+ II NK++ +NA + G +H+AA G + LL G DP++
Sbjct: 46 NGHIAVVQKIIPYLNKEV-INAQNESGNTAMHWAALNGHAEICKLLLEAGGDPHI 99
>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 523
Score = 30.7 bits (66), Expect = 0.14
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +1
Query: 52 ELVWGIKNGDIDQVKDIIENKKIDVNASID--GRVPLHYAADYGQTTVLNYLLNKGA 216
EL + GD++ VK ++EN +N +D PL A+ G V+ +LL GA
Sbjct: 55 ELCEACRRGDLEVVKSLVENYNTPIN-QVDQFDYSPLVLASLCGHEPVVKFLLENGA 110
Score = 29.1 bits (62), Expect = 0.42
Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 175 GQTTVLNYLLNKGADP-NVVDKHGISVLLAAIWEGHTDCVKTLLKNGASKNGKTPDGTPY 351
G V+ L+ P N VD+ S L+ A GH VK LL+NGA T G
Sbjct: 63 GDLEVVKSLVENYNTPINQVDQFDYSPLVLASLCGHEPVVKFLLENGALCERDTFQGERC 122
Query: 352 LEAAEKD 372
L A D
Sbjct: 123 LYGALND 129
>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
Res1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 637
Score = 30.3 bits (65), Expect = 0.18
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 121 DVNASID--GRVPLHYAADYGQTTVLNYLLNKGAD 219
DVNA ID G LH+AA G +++ LL GA+
Sbjct: 228 DVNAGIDEDGHTALHWAAAMGNLEMMHALLQAGAN 262
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 29.5 bits (63), Expect = 0.32
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 127 NASIDGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHG 243
N + PLHYA ++ LL GADP +++ +G
Sbjct: 428 NVHLHTSTPLHYAVTQKNAKLVAKLLRNGADPAMLNGNG 466
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 29.5 bits (63), Expect = 0.32
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +1
Query: 118 IDVNASID--GRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLLAAI 267
+D++ ID G LH+AA + +L L++KGA+P + G + L+ ++
Sbjct: 347 LDLDVPIDELGHAALHWAAAVAKMPLLQALIHKGANPLRGNLTGETALMRSV 398
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 28.7 bits (61), Expect = 0.56
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +1
Query: 139 DGRVPLHYAADYGQTTVLNYLLNKGADPNVVDKHGISVLL-AAIWEGHTDC 288
DG LH+A G ++ LL AD V ++ + L+ + I+ + DC
Sbjct: 247 DGHTSLHWACSMGHIEMIKLLLRANADIGVCNRLSQTPLMRSVIFTNNYDC 297
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 89 WSISPFLIPQTNSLMMMYFLILFKFITFL 3
W I + N+L+ Y+ +LF F+ FL
Sbjct: 116 WLIHVYEFLDGNNLLCRYYGVLFHFLDFL 144
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 4 KKVINLKRIKKYIIMSELVWGIKNGDIDQVKDIIENK 114
K++IN ++ K +I+ +LV D KDIIENK
Sbjct: 27 KRLINNEQFCKNVILQKLV--------DSTKDIIENK 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,002,642
Number of Sequences: 5004
Number of extensions: 40110
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -