Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -2

Query: 274 LPILQ--LIELIFHVYQQHLDQ 215
           +P LQ  L E + + +QQHLDQ
Sbjct: 605 IPKLQIALSEFVINPHQQHLDQ 626


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 DGRVPLHYAADYGQTTVLNYLLNK 210
           D  +P+H+A    +   +NYL+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRR 180


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 DGRVPLHYAADYGQTTVLNYLLNK 210
           D  +P+H+A    +   +NYL+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRR 180


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 DGRVPLHYAADYGQTTVLNYLLNK 210
           D  +P+H+A    +   +NYL+ +
Sbjct: 208 DPLIPVHFALRIYRNGTVNYLMRR 231


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = +1

Query: 139 DGRVPLHYAADYGQTTVLNYLLNK 210
           D  +P+H+A    +   +NYL+ +
Sbjct: 157 DPLIPVHFALRIYRNGTVNYLMRR 180


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,876
Number of Sequences: 438
Number of extensions: 2782
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)