Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...   131   5e-32
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    35   0.008
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   0.73 
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   5.2  
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   9.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   9.0  
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p...    25   9.0  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score =  131 bits (317), Expect = 5e-32
 Identities = 62/110 (56%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
 Frame = +1

Query: 142 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 318
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 319 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
           KK+FACNGT+V+  + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 60  KKDFACNGTIVKDDDLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 34.7 bits (76), Expect = 0.008
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = +1

Query: 220 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQ 396
           V ++  +R  RK +TTVQGL +   + KK  +    +FA   +V +  +  + + +QGD 
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGDL 158

Query: 397 RENICQWLTKSGLVKPE 447
             +I  ++ +     PE
Sbjct: 159 NYDIFDFILEKFKEVPE 175


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 201 VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 106
           +LR   S+  W+  ++  +G T+E+RV LF+R
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 103 VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 279
           V  +   P     S++ L   D     AI     D +  + H R+Q +N R T    QG+
Sbjct: 50  VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109

Query: 280 SS 285
            S
Sbjct: 110 ES 111


>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 498 GHVMF*QGGLETVHLELFRLH*AGFGEP 415
           GH M    G  TV L+L ++H  GF +P
Sbjct: 268 GHKMVMSIGGSTVDLDLVQIHPTGFVDP 295


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 141  VHPESQHIRPIRRCYQKL 194
            +HP  + +  +RRC+Q+L
Sbjct: 1969 IHPLKRKVAQVRRCFQEL 1986


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 96  SQRFVETKRPYVQSYVHPESQHIRPIRRC 182
           S+  V+   P VQSY  PE      +R C
Sbjct: 132 SETTVQDYNPQVQSYCRPEPLSSNHVRSC 160


>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 832

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
 Frame = +1

Query: 262 TTVQGLSSEYDL----KKIVRACKKEFACN 339
           +T+ GL++ Y +     K V+AC K F CN
Sbjct: 122 STLSGLAASYVILGLQSKNVQACIKHFVCN 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,100,873
Number of Sequences: 5004
Number of extensions: 41745
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)