Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D06f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 2e-33
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 29 2.3
SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14) 28 5.4
SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_47415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 138 bits (335), Expect = 2e-33
Identities = 65/103 (63%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
Frame = +1
Query: 169 PFADAIKS---SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACN 339
PF DA K S VQ ++HVRIQQRNGRKTLTT+QG+S EYD KK+V+A KK+FACN
Sbjct: 482 PFEDASKGDGESNTSVQRDVIHVRIQQRNGRKTLTTIQGISDEYDKKKLVKAFKKQFACN 541
Query: 340 GTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
GTVV+HPEYGE +QLQGDQR + ++L + L K +Q+KVHGF
Sbjct: 542 GTVVDHPEYGECIQLQGDQRAHAQEFLLQIDLAKKDQIKVHGF 584
>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 29.1 bits (62), Expect = 2.3
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = -1
Query: 440 FTKPDLVSHWQIFSRWSP*SCSTSPYSGCSTTVPLHANSFLHARTIFFRSYSEERPCTVV 261
+TK +L H +I + P C PY C + N +HART +++ERP
Sbjct: 583 YTKTELRQHVRIHTGEKPYKC---PY--CDKAFAVKGNCTVHART-----HTKERPYKCT 632
Query: 260 SVLRPFRC 237
+ R F C
Sbjct: 633 NCGRAFSC 640
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 370 EVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF*AALLKHNMSTLNI 510
+VL+ QR++ QW G+V+P QL A + M+ LN+
Sbjct: 1157 KVLEFVAIQRKDNNQWAIPGGMVEPGQLVTQALKAEFGEEAMAKLNV 1203
>SB_37084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +3
Query: 108 VETKRPYVQSYVHPESQ---HIRPIRRCYQKLGGRRSRWFSPRPYPATKRA*DADYGARP 278
VE + V+ + ES +IR RC+Q +R+ F RP+P T+ D RP
Sbjct: 49 VEVREDEVKERIRAESLANVNIRWHGRCHQSNTSKRNLSFVKRPFPTTQAENDEPEPRRP 108
>SB_2694| Best HMM Match : LIM (HMM E-Value=6.6e-14)
Length = 446
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = -1
Query: 353 STTVPLHA---NSFLHART--IFFRSYSEERPCTVVSVLRPFRC 237
STTV +H N+ LH R I+ R+Y+ + P +S P RC
Sbjct: 254 STTVAVHKDARNADLHTRVTLIYRRAYNADLPTRTMSEGAPMRC 297
>SB_830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1390
Score = 27.9 bits (59), Expect = 5.4
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 165 ECVEILDGHTIERRVSLFQRNAAILRTQQYNC 70
+C+E +D H ++ + FQ L T Y C
Sbjct: 1181 KCIECVDPHALQFIIDAFQGQVYALSTHPYGC 1212
>SB_4667| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 7.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 275 PCTVVSVLRPFRCWIRTWTKP 213
P + + + P +CW R W KP
Sbjct: 161 PRSRIPLKNPLKCWYRNWLKP 181
>SB_37825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.5 bits (58), Expect = 7.1
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -1
Query: 185 IASANGSNVLRFWMDIRLNVGSLCFNETLRYYALNNITVTDNALL 51
+A +G W D+ SL FN +L AL ++TV D L
Sbjct: 734 VAVLDGWGFGTIWCDVLAVTVSLSFNASLVTLALQSVTVNDTRAL 778
>SB_53762| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 208 QDGLVHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNG 342
QDGLV R+ Q NGR T + L YD +++ K+ G
Sbjct: 760 QDGLVSYRVSQGNGRSDGTGLGDLRDVGYDGRRLAYGTKRGVLSGG 805
>SB_5195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 542
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 324 LLACPHDLLQVIFRGKALHRSQ 259
++ C H+LL++ RGK H+SQ
Sbjct: 518 VIQCLHELLELTLRGKQDHQSQ 539
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,395
Number of Sequences: 59808
Number of extensions: 333502
Number of successful extensions: 836
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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