Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D06f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 131 3e-31
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 129 1e-30
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 128 2e-30
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 124 4e-29
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 124 4e-29
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 35 0.029
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 34 0.067
At5g49130.1 68418.m06081 MATE efflux family protein contains Pfa... 30 0.82
At2g15345.1 68415.m01755 expressed protein 30 1.1
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 28 4.4
At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains... 27 5.8
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 27 5.8
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 27 5.8
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 7.7
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 27 7.7
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 131 bits (316), Expect = 3e-31
Identities = 59/110 (53%), Positives = 77/110 (70%)
Frame = +1
Query: 139 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 318
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 319 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
KKEF CNGTVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 129 bits (311), Expect = 1e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +1
Query: 163 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 342
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 343 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 128 bits (310), Expect = 2e-30
Identities = 58/102 (56%), Positives = 74/102 (72%)
Frame = +1
Query: 163 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 342
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 343 TVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
TVV+ E G+V+QLQGDQR+N+ +L ++GLVK + +K+HGF
Sbjct: 72 TVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 4e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +1
Query: 139 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 318
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 319 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 124 bits (299), Expect = 4e-29
Identities = 53/110 (48%), Positives = 81/110 (73%)
Frame = +1
Query: 139 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 318
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 319 KKEFACNGTVVEHPEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 468
KK+F CNG VV+ E G+++QLQGDQR+ + Q+L ++G+ K +Q+K+HGF
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQRKKVSQFLVQTGIAKKDQIKIHGF 112
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 35.1 bits (77), Expect = 0.029
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +1
Query: 241 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENICQW 417
RN RK +T V+GL L + K+FA +VV+ P E + +QGD +I ++
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGDIIYDIVEF 173
Query: 418 LTKSGLVKPEQ 450
+T + PE+
Sbjct: 174 ITDTWPDVPER 184
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 33.9 bits (74), Expect = 0.067
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Frame = +1
Query: 103 VSLKQRDPTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 264
+S+ R N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g49130.1 68418.m06081 MATE efflux family protein contains Pfam
profile PF01554: MatE Uncharacterized membrane protein
family
Length = 502
Score = 30.3 bits (65), Expect = 0.82
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 356 CSTTVP-LHANSFLHARTIFFRSYSEERP---CTVVSVL 252
CS ++P L ANSFLH I+ R P CT+VSVL
Sbjct: 150 CSFSLPDLLANSFLHPLRIYLRCKGTTWPLMWCTLVSVL 188
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 214 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 354
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 292 DLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGDQRENI 408
++ R E+A NGT+ EH YGE + +R I
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGEAALVSWARRMKI 467
>At5g04780.1 68418.m00494 SEC14 cytosolic factor-related contains
Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; contains Pfam profile PF01535:
PPR repeat (three copies)
Length = 864
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -3
Query: 309 HDLLQVIFRGKALHRSQRLT-PVSLLDTDVD*TILNVVLRAFDSIGEWVECV-EILDG 142
H++LQ+ R A+ ++ + +D + D T+LNV++ A+ G +VE ++ DG
Sbjct: 57 HEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCG-FVELARQVFDG 113
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/75 (25%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Frame = +1
Query: 43 RAHNSALSVTVILLSA*YRSVSLKQRDPTFNRMSIQN------LNTFDPFADAIKSSEDD 204
R HN + + ++ R++S+ +++R+S+Q+ LN+ +P ADA
Sbjct: 342 RTHNLIVRLRHNVIRTGLRNISI-----SYSRISLQDVAQKLRLNSANPVADAESIVAKA 396
Query: 205 VQDGLVHVRIQQRNG 249
++DG + I +NG
Sbjct: 397 IRDGAIDATIDHKNG 411
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 66 SDSYIVECVVSQRFVETKRPYVQSYVHPESQHIRPIRRCYQKLGGRRSRWFSPRPYPATK 245
+D + VV + T RP++++ + + PI+R +KL R+ S P P+ K
Sbjct: 604 NDGMMPNYVVYHELISTTRPFMRNVCAVDMAWVAPIKRKIEKLNVRK---LSGGPAPSFK 660
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.1 bits (57), Expect = 7.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -1
Query: 242 RCWIRTWTKPS*TSSSELLIASANGSNVLRFWMDIRLNVGSLCFNETLRYYALNNITVTD 63
R W R W +P + +S+++I + SN L + LN+ R + L + T+ D
Sbjct: 256 RMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNIA--------REFGLQSATIGD 307
Query: 62 NALLCA 45
+CA
Sbjct: 308 EVDICA 313
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 202 DVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 360
D + ++H N T +Q LSSE L KI KEF C+G V P
Sbjct: 269 DSERWILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,111,510
Number of Sequences: 28952
Number of extensions: 223687
Number of successful extensions: 689
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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