Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0693 - 26334574-26336121 30 0.98
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 29 1.7
11_06_0232 + 21559467-21559532,21559586-21560200 29 3.0
12_02_0847 + 23630937-23631099,23631200-23631396,23631604-236317... 28 5.2
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 28 5.2
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 28 5.2
09_02_0408 - 8638298-8638594,8638717-8639103,8639415-8640413,864... 27 6.9
03_02_1035 - 13557425-13557721,13557855-13558058,13558143-135583... 27 6.9
11_06_0202 - 21184217-21184503,21184622-21184982 27 9.1
02_04_0362 - 22366668-22367516 27 9.1
02_02_0239 - 8177152-8177445,8177821-8178207,8178717-8179715,817... 27 9.1
02_02_0087 - 6650570-6652021 27 9.1
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 27 9.1
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589... 27 9.1
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 0.98
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 9 R*KPFKLFCVFSWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKR 149
R +P +L F+ R C+P+ P SP +S SS P +PL R
Sbjct: 40 RRRPLELLA-FAVRHCLPSSPPSPHHHSLAALLLLSSPPPPALPLLR 85
>04_04_1267 - 32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 27 LFCVFSWRLCMPTKPQSPTPNSKTIF---TTASSLPITTIPLKRANRSTRTRRAKSSQMS 197
L C+ LC+ P + P S +F A++LP P+ A+R++ +++ + S
Sbjct: 815 LLCIHIGLLCVQDNPNNRPPMSSVVFMLENEAAALPAPIQPVYFAHRASGAKQSGGNTSS 874
Query: 198 *TNSYETT 221
N+ T
Sbjct: 875 SNNNMSLT 882
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 75 SPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYET 218
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>12_02_0847 +
23630937-23631099,23631200-23631396,23631604-23631738,
23631904-23632077,23632195-23632407,23632507-23632751,
23632890-23632930,23633200-23633238,23633552-23633565
Length = 406
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 131 DHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLW--LQGSKDIVREC 289
D +++ K+ Y + + + N + ++ N + AY+LW G K +REC
Sbjct: 301 DEKLQELKRDYGEGAHKAVMNALMEMKEYNVLADRSIAYELWNYKDGRKATLREC 355
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.9 bits (59), Expect = 5.2
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Frame = -2
Query: 505 TLSVHNLEVDLVVLPQRNELPADFWTRLVLAIAVGKSAIV----AVLIVQRQ------SE 356
T SV LEVD + +R ELPA RL+ + V S I+ A+++ Q ++
Sbjct: 77 TASVQTLEVDKATMMRRCELPARD-LRLLDPLFVYPSTILGRERAIVVNLEQIRCVITAD 135
Query: 355 TVALVHQLNVVFCEYKSELNREAL 284
V L++ L+ +Y +EL R L
Sbjct: 136 EVLLLNSLDSYVLQYAAELQRRLL 159
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 27.9 bits (59), Expect = 5.2
Identities = 22/98 (22%), Positives = 42/98 (42%)
Frame = +2
Query: 83 SKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 262
+K D I++ D EK+ ++ + SE + N + NC EY L +
Sbjct: 241 AKKSDIKDQPIVLRRSDTESEKNDELDQTPASEPSSMSHNSANSTIRFNCREYRVILRKE 300
Query: 263 GSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDD 376
+ V + AE ++ +++R+G+ L +DD
Sbjct: 301 LTNSDVGNIGRIVMPKRDAEAHLPALHQREGVMLKMDD 338
>09_02_0408 -
8638298-8638594,8638717-8639103,8639415-8640413,
8640501-8640655,8640768-8640855,8640941-8641044,
8641199-8641421,8641536-8641620,8641706-8642097,
8642962-8643150
Length = 972
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 451 ELPADFWTRLVLAIAVGKSAIVAVLIVQRQ 362
ELPAD + V+++A S ++AV ++QR+
Sbjct: 524 ELPADSFGAYVISMATAPSDVLAVELLQRE 553
>03_02_1035 -
13557425-13557721,13557855-13558058,13558143-13558332,
13558450-13558841,13558931-13559023,13559297-13559500,
13559572-13559635,13559760-13559806,13559825-13559971,
13560243-13560335,13560420-13560599,13560993-13561128,
13561216-13561466,13561556-13561669,13561794-13561991,
13562050-13562110,13562921-13563210
Length = 986
Score = 27.5 bits (58), Expect = 6.9
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +2
Query: 92 EDDLYNSILVADYDHSVEKSKQIYEDKKSEVITNVV 199
+++L+N I+V + H V I +DK+ + + V+
Sbjct: 93 KNELWNKIMVLKFSHQVLVYFDIQQDKRKDAVKKVI 128
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 60 PTKPQSPTPNSKTIFTTASSLP 125
P+ PQ+P P+S FT+ S LP
Sbjct: 159 PSLPQAPKPSSPPPFTSPSPLP 180
>02_04_0362 - 22366668-22367516
Length = 282
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +1
Query: 322 KQH*ADVQARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQ 486
K+ A +A RSRF V R EQ+R + + R +G+ E+ ++L ++ GL++
Sbjct: 191 KKQVAQQEAERSRFLVARAEQER-RAAIVRAEGESEA-ARLISEATAAAGTGLIE 243
>02_02_0239 -
8177152-8177445,8177821-8178207,8178717-8179715,
8179799-8179953,8180725-8180812,8180901-8181004,
8181327-8181549,8182251-8182335,8182425-8182816,
8182852-8183097
Length = 990
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 451 ELPADFWTRLVLAIAVGKSAIVAVLIVQRQ 362
ELPAD + ++++A S ++AV ++QR+
Sbjct: 543 ELPADCFGAYIISMATAPSDVLAVELLQRE 572
>02_02_0087 - 6650570-6652021
Length = 483
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +2
Query: 263 GSKDIVRECFPVEFRLIFAENNI-KLMYKRDGLAL-TLDDENSND 391
G+KD++ E FP + + A +++ K++ DGLA+ T E+ +D
Sbjct: 130 GAKDVLAEAFPFLAKTVEASHDMAKVLAAIDGLAVATFAGEDGDD 174
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 382 QQRWQTCLRRWQGQDESKSQLEVRSSVGEQQGLLQDCEHS 501
Q + Q L +GQ+E+ + L++ S + + G + DC +S
Sbjct: 100 QNKLQEALDLLKGQEETSAILQLESQIYYRLGRMNDCMNS 139
>01_01_0763 +
5898719-5899021,5899124-5899518,5899619-5899703,
5899810-5900032,5900131-5900327,5900531-5900601,
5904034-5904218,5905914-5906068,5906241-5907632,
5907973-5908269
Length = 1100
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = -2
Query: 451 ELPADFWTRLVLAIAVGKSAIVAVLIVQRQ 362
ELPAD + ++++A S ++AV ++QR+
Sbjct: 650 ELPADSFGAYIISMATAPSDVLAVELLQRE 679
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,740,757
Number of Sequences: 37544
Number of extensions: 188722
Number of successful extensions: 792
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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