Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D05f
(521 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54) 30 1.3
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 29 1.8
SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12) 29 2.3
SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17) 29 2.3
SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.1
SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15) 28 5.4
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2) 28 5.4
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.1
SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013) 27 7.1
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38) 27 9.4
SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13) 27 9.4
SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_30644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1887
Score = 29.9 bits (64), Expect = 1.3
Identities = 24/84 (28%), Positives = 35/84 (41%)
Frame = +3
Query: 180 KSSQMS*TNSYETTR*TAWSTPTSYGSKAPKIXXXXXXXXXXXXXXQKTTLS*CTSATVS 359
K+ + + T TTR T T T+ +K P I TT T+AT +
Sbjct: 1419 KTREEATTKPTTTTRKTTIPTTTASETKPPTIRKTTTATTTVPATKPPTTRK-TTTATTT 1477
Query: 360 L*RWTMRTATMADLPTAMARTRRV 431
R T + T A+ PT + RR+
Sbjct: 1478 QGRTTRKPTTTAEPPTTVDNLRRI 1501
>SB_35605| Best HMM Match : Treacle (HMM E-Value=0.54)
Length = 776
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 41 FVASLYANETSVSDSKLEDDLYNSILVADYDHSVEKSKQIYEDKKSEVIT 190
F ASL A + S SDS EDDL ++ + DH K++ + + +K + T
Sbjct: 548 FRASLAAQQDSTSDSSSEDDL----IMDEKDHPQGKARSLSDKQKCKNTT 593
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Frame = +1
Query: 112 HPRCRLRPFR*KEQTDLRGQEERSHHK----CRKQTHTKQQDELHGVRLPAMAPRLQRYR 279
HP +R +R Q RG+ ER HH CR +T Q + + ++RYR
Sbjct: 145 HPGVAIRRYR-TRQVSQRGERERRHHPEVAICRYRTRQTGQSTRRTRKTTSSGVAIRRYR 203
>SB_55241| Best HMM Match : PH (HMM E-Value=6.1e-12)
Length = 734
Score = 29.1 bits (62), Expect = 2.3
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 3/123 (2%)
Frame = +2
Query: 71 SVSDSKLEDDLYNSILVADYDHSVEKSK-QIYEDKKSEVI--TNVVNKLIRNNKMNCMEY 241
S+S+S E+ N D S E + Q+ +D K + + ++ NK + +K++ E
Sbjct: 340 SLSESSSENIKVNVSSDDDKGGSEEPQQHQLADDDKEDRLDTSDAENKQVEEDKIDEKER 399
Query: 242 AYQLWLQGSKDIVRECFPVEFRLIFAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKD 421
+ GSK E +E L +EN L GLA+ +D E SN + D
Sbjct: 400 ENVVEQVGSKG-QNEAMTLENAL--SENKENLNQGTSGLAVVVDQEQSNGELIKEKAEND 456
Query: 422 KTS 430
TS
Sbjct: 457 STS 459
>SB_29130| Best HMM Match : Vicilin_N (HMM E-Value=0.17)
Length = 355
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 343 QARRSRFDVGR*EQQRWQTCLRRWQGQDESKSQLEVRSSVGEQQ 474
Q R +F++ +QQ+WQ R+WQ Q +SQLE + E Q
Sbjct: 292 QQSRQQFEL---QQQQWQQQQRQWQ-QQLQQSQLEQQQRQQEMQ 331
>SB_25182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 203 KLIRNNKMNCMEYAYQLWLQGSKDIVRECF 292
+L NN+M +A+ WL+G + R+C+
Sbjct: 17 RLHNNNRMLICTFAHSTWLKGRQGSSRQCY 46
>SB_11840| Best HMM Match : DUF858 (HMM E-Value=8.1e-15)
Length = 257
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/46 (26%), Positives = 27/46 (58%)
Frame = +2
Query: 113 ILVADYDHSVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYAYQ 250
I++A +D S ++S IY+ + NV+N+ +R ++ M + ++
Sbjct: 84 IIIAGFDKS-DRSLTIYQALPGNLEGNVINRSVRKQVIDAMNFDFR 128
>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
Length = 404
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Frame = +3
Query: 63 TKPQSPTPNSKTIFTTASSLPITTIP--LKRANRSTRTRRAKSSQ 191
T P PTP K + +++P+T +P + + +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = +3
Query: 42 SWRLCMPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTRTRRAKSSQMS*TNSYETT 221
+W++ + T ++ T+ +T SS +TT R+ + A S + + T+
Sbjct: 2766 TWKIEQRERHAKTTTSASTVDSTGSSKAVTTTVAATTTRTIQAAPASSDNTAANKAQSTS 2825
Query: 222 R*TAWSTPTSYGS 260
T+ +S GS
Sbjct: 2826 SATSSEQTSSSGS 2838
>SB_7296| Best HMM Match : PHD (HMM E-Value=0.0013)
Length = 873
Score = 27.5 bits (58), Expect = 7.1
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 57 MPTKPQSPTPNSKTIFTTASSLPITTIPLKRANRSTR 167
+ T P+ NS++ + S LP+T+ P+KR + TR
Sbjct: 749 LSTNHDEPS-NSRSTHSLYSPLPVTSTPVKRFRKITR 784
>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
Length = 667
Score = 27.1 bits (57), Expect = 9.4
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 57 MPTKPQSPTPNSKTIFT-----TASSLPIT-TIPLKRANRSTRTRRAKSSQMS*TNSYET 218
+PT ++PTP ++ +FT TA +P T IP +T+ R + Q+ T T
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTK-RVPTTGQIQATPEMPT 239
Query: 219 TR 224
T+
Sbjct: 240 TK 241
>SB_47680| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2749
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 314 FAENNIKLMYKRDGLALTLDDENSNDGRLAYGDGKDKTSPKVSWKFVPLWEN 469
F +N + KR+ + +LDD S +G D++ K S+ P WEN
Sbjct: 830 FVDNALSDTVKRESIDASLDDSLSLSPPTLFG---DESEDKCSFGAPPGWEN 878
>SB_35038| Best HMM Match : Ras (HMM E-Value=6.8e-13)
Length = 322
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +2
Query: 170 KKSEVITNVVNKLIRNNKMNCME------YAYQLWLQGSKDIVR 283
KK + ++V L + NK N +E Q LQGSKDIVR
Sbjct: 207 KKKKAAISLVESLFQENKPNPIEEECENFLKEQSGLQGSKDIVR 250
>SB_14036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 658
Score = 27.1 bits (57), Expect = 9.4
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 362 LTLDDENSNDGRLAYGDGKDKTSPK-VSWKFVPLWENNKVYFKI 490
L D+ SN+ R A + + KT PK V +K + + + Y+++
Sbjct: 105 LARDEMQSNERRRAQANSEQKTDPKGVRYKIMARRDQSSSYYEV 148
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,506
Number of Sequences: 59808
Number of extensions: 239171
Number of successful extensions: 993
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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