Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D04f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    27   0.12 
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 232 DEMRRRRNEVT-VELRKNKREETLQKRRNVPISYSTDEEEIDK 357
           ++ ++ RNE   ++LR   +EE LQ RR   +     E+E +K
Sbjct: 13  EKFKQLRNEDNKIDLRSRTKEERLQYRREAWLVQQEREQEYEK 55


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 60  TSDGGLTSIFTKYSTTHKG 4
           + DGG  S+  K  TTH G
Sbjct: 442 SDDGGPLSLKNKVETTHSG 460


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +1

Query: 190 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKRE 291
           K  + + +  GKD   M   R ++  E RKNK +
Sbjct: 440 KKMLKIKRLFGKDRKIMDMVREKIIEEKRKNKNK 473


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 236 SSTSLPAFLNTCMRFFA*SVAILSVLAVSTQYVVITQ 126
           SSTSLPA + T       + A  +  A +T   +I Q
Sbjct: 99  SSTSLPATITTTTTTTTTTTATAAATATTTATGLIKQ 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,703
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)