Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP... 77 7e-15
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP... 77 7e-15
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 75 4e-14
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi... 73 9e-14
At1g02690.1 68414.m00219 importin alpha-2 subunit, putative simi... 73 9e-14
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 70 1e-12
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 70 1e-12
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim... 62 2e-10
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 60 1e-09
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 45 4e-05
At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr... 41 4e-04
At3g49570.1 68416.m05417 expressed protein 31 0.47
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 0.82
At3g31910.1 68416.m04037 hypothetical protein 30 1.1
At3g05760.1 68416.m00647 expressed protein 29 1.4
At5g38400.1 68418.m04642 hypothetical protein 29 1.9
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos... 29 2.5
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 28 3.3
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 28 3.3
At3g20490.1 68416.m02595 expressed protein 28 3.3
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 28 3.3
At3g49580.1 68416.m05418 expressed protein 28 4.4
At2g48120.1 68415.m06024 pale cress protein (PAC) identical to P... 28 4.4
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 4.4
At5g24660.1 68418.m02914 expressed protein 27 5.8
At3g46600.2 68416.m05059 scarecrow transcription factor family p... 27 5.8
At3g46600.1 68416.m05058 scarecrow transcription factor family p... 27 5.8
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 27 5.8
At2g13320.1 68415.m01468 expressed protein anf genefinder 27 5.8
At5g53800.1 68418.m06685 expressed protein 27 7.7
At5g12300.1 68418.m01446 C2 domain-containing protein contains P... 27 7.7
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 27 7.7
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 7.7
>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 77.0 bits (181), Expect = 7e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Frame = +1
Query: 184 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 339
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 340 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 507
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 508 LP 513
+P
Sbjct: 124 IP 125
>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 77.0 bits (181), Expect = 7e-15
Identities = 46/122 (37%), Positives = 73/122 (59%), Gaps = 12/122 (9%)
Frame = +1
Query: 184 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 339
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 340 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 507
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 508 LP 513
+P
Sbjct: 124 IP 125
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 74.5 bits (175), Expect = 4e-14
Identities = 42/101 (41%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRR---NVPISYSTDEEEIDKNLATTDLDELVMN 396
D +E RRRR + VE+RKNKREE LQK+R ++ +T + E D + A D L
Sbjct: 21 DAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAM 80
Query: 397 AAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
A +E+ +QL A RKLLS ++NPPI+E++ +G++P
Sbjct: 81 VAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVP 121
>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 539
Score = 73.3 bits (172), Expect = 9e-14
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 393
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 394 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
A +E+ + QL A R+LLS ++NPPI+E++ +G++P
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVP 122
>At1g02690.1 68414.m00219 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 538
Score = 73.3 bits (172), Expect = 9e-14
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 6/102 (5%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 393
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 394 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
A +E+ + QL A R+LLS ++NPPI+E++ +G++P
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVP 122
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 390
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 391 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 69.7 bits (163), Expect = 1e-12
Identities = 40/101 (39%), Positives = 63/101 (62%), Gaps = 5/101 (4%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 390
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 391 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVP 118
>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
similar to importin alpha 2 [Capsicum annuum]
GI:13752562; contains Pfam profiles PF01749: Importin
beta binding domain, PF00514:
Armadillo/beta-catenin-like repeat; non-consensus GG
donor splice site at exon 1 and 6; CT acceptor splice
site at exon 2
Length = 444
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/103 (36%), Positives = 61/103 (59%), Gaps = 7/103 (6%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-----EIDKNLATTDLDEL- 387
D +E RRRR + VE+RK+KREE+LQK+R + + + + L L+ L
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQFAPLLFLLHQLLEKKLESLP 80
Query: 388 -VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
++ +++ QL A Q RKLLS +++PPI+E+I AG++P
Sbjct: 81 AMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVP 123
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 6/102 (5%)
Frame = +1
Query: 226 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAAN 405
D +E RRRR + VE+RK+KR E L K+R V + D L + D E ++ AN
Sbjct: 21 DAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVL------PPDYKLISNDPFESLLEIAN 74
Query: 406 ------AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILP 513
+++P QL + R +LS D++PP D +I +G++P
Sbjct: 75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVP 116
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 44.8 bits (101), Expect = 4e-05
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 241 RRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPE 420
RRRR + VE+RK KREE+L K+R + +S + +D+ L ++ ++ +
Sbjct: 24 RRRREDDMVEIRKAKREESLLKKRREALPHSPSADSLDQKL---------ISCIWSDERD 74
Query: 421 AQLAAVQQCRKLLSCDK-NPPIDELIAAGILP 513
+ A Q R LL + N ++E+I AG++P
Sbjct: 75 LLIEATTQIRTLLCGEMFNVRVEEVIQAGLVP 106
>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 483
Score = 41.1 bits (92), Expect = 4e-04
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 17/133 (12%)
Frame = +1
Query: 172 MATD-QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD-EE 345
MA D A NR K++ +V RRR+ VTV K +RE ++ +R + + D E+
Sbjct: 1 MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTV--AKERRELLVRAKRLCRVGTNGDVED 58
Query: 346 EIDKNLATTDLDELVMNAANAENPEAQLAAVQ---------------QCRKLLSCDKNPP 480
+ +N D ++ ++ A +++ E +AVQ + R+LLS + PP
Sbjct: 59 ALVENEMMVDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPP 118
Query: 481 IDELIAAGILPIL 519
++ + AG +P+L
Sbjct: 119 VEAALRAGAIPLL 131
>At3g49570.1 68416.m05417 expressed protein
Length = 97
Score = 31.1 bits (67), Expect = 0.47
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +1
Query: 217 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 387
A ++V+E+RRR E+ E+ + K+E RR V + EE + LA +++ L
Sbjct: 11 AAEEVEELRRRNGELEREMEEMKKEMVQLWRRTVVAEEA--EERLCSQLAELEVESL 65
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 0.82
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +1
Query: 115 SLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREE 294
++ L +I T C+ + Q + + KN+G VD + R+ EVT + K +E
Sbjct: 454 NVLLNLIETMCMSPQNLSIADLGQTEQALTYLKNSGFKVDWLERKLEEVT----EKKIQE 509
Query: 295 TLQKRRNVPISYSTDEEEIDKNLATTDLDELV 390
+ K R + EE D +D + L+
Sbjct: 510 HIGKSRMQGLEEDLKEELKDLKQKCSDTEALL 541
>At3g31910.1 68416.m04037 hypothetical protein
Length = 399
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 223 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAA 402
K V + ++E + +K+ +E L+KR + + S EE++K+L ++ E +AA
Sbjct: 311 KKVTDFIEEKDEEISKKKKDTLKEDLEKRSVLDVQLSNRIEEVEKDL--KEMKESKPDAA 368
Query: 403 NAENPE 420
+ N E
Sbjct: 369 TSRNDE 374
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 29.5 bits (63), Expect = 1.4
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +1
Query: 223 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 366
+D+DE R++ E EL++ +RE+ +K++ + +E E+D +A
Sbjct: 144 QDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVE---EEPEMDPEVA 188
>At5g38400.1 68418.m04642 hypothetical protein
Length = 151
Score = 29.1 bits (62), Expect = 1.9
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +1
Query: 169 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 348
K A AK RM+V+K + K + +R+++ + + L + K+E+T + NV + EE+
Sbjct: 35 KHARMTAKARMNVYKESMKPLPP-KRKKSLMIISLMR-KKEDTQDDQNNVTVVEKEKEEK 92
>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
phosphatidylinositol transfer-like protein, putative
similar to phosphatidylinositol transfer-like protein
III (GI:14486705) [Lotus japonicus]; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminu
Length = 612
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +1
Query: 157 ASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYST 336
+S DK + K +G +V+EM + V ELR K + R ISY T
Sbjct: 370 SSCDKPSFSGIKASDTSTAESGSEVEEMASPK--VNRELRVPKLTPVCEDIRGTAISYPT 427
Query: 337 DEEEIDKNLATTDLD 381
D E D + +D
Sbjct: 428 DSSEYDSPMVDKVVD 442
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 28.3 bits (60), Expect = 3.3
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +1
Query: 181 DQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKN 360
++ ++ M KD+ +++ +R+ +K T QK+ P S S + + +KN
Sbjct: 103 EELRDAMDSMSKMLKDLKDLQNQRDCEEDVKKKGVLHGTHQKQTFNPESCSVNFDGFNKN 162
Query: 361 LATTDLDELVMNAANAE 411
DLDE+ + AE
Sbjct: 163 TEEFDLDEIFDYVSTAE 179
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.3 bits (60), Expect = 3.3
Identities = 23/89 (25%), Positives = 37/89 (41%)
Frame = +1
Query: 133 ITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 312
I Y ET D D+ + M A ++ E RR E K + E L++
Sbjct: 71 IIEYKSETEEDDDDDEDEDEEYMRAQLEAAEE--EERRVAQAQIEEEEKRRAEAQLEETE 128
Query: 313 NVPISYSTDEEEIDKNLATTDLDELVMNA 399
+ +EEE+ ++ A + DEL+ A
Sbjct: 129 KLLAKARLEEEEMRRSKAQLEEDELLAKA 157
>At3g20490.1 68416.m02595 expressed protein
Length = 458
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -1
Query: 431 ANCASGFSALAAFITSSSRSVVARFLSISSSS 336
A+ ASG S++A+ SSRS + RF + S S
Sbjct: 149 ASAASGISSVASLFQMSSRSPLRRFQLLDSDS 180
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 518 RMGSIPAAMSSSIGGFLSHESSFLHCCTAAN 426
R S + S GG L +S++ CCT +N
Sbjct: 317 RSPSFKSVAGSHFGGMLEQQSNYSSCCTESN 347
>At3g49580.1 68416.m05418 expressed protein
Length = 94
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 217 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 387
A +++DE+RRR E++ E+ + K E +R V + EE++ LA +++ L
Sbjct: 11 AAEEMDELRRRNIELSREVAEMKTEMIKLWQRTVVAEEA--EEQLCSQLAELEVESL 65
>At2g48120.1 68415.m06024 pale cress protein (PAC) identical to PAC
[Arabidopsis thaliana] gi|1483213|emb|CAA65334
Length = 313
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 232 DEMRRRRNEVTVELRKNKREETLQKRRNV 318
DE + R+ E T ELR+ +REE ++ R +
Sbjct: 61 DEWQARQREKTKELRRMQREEEEEEERKI 89
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 184 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 363
Q K R V + ++ E +RR E + KREE + KRR + EE+++ +
Sbjct: 538 QRKEREEVERKR-REEQERKRREEEARKREEERKREEEMAKRREQE-RQRKEREEVERKI 595
>At5g24660.1 68418.m02914 expressed protein
Length = 94
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +1
Query: 217 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 387
A +VDE+RR+ E+ + + K+ E LQ R ++ EE + LA + + L
Sbjct: 11 AASEVDELRRKNGEMEKAVEEMKK-EMLQLWRRTQVAEEA-EERLCSQLAELEAESL 65
>At3g46600.2 68416.m05059 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 453
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 229 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 408
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 31 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 89
Query: 409 ENPEAQLAAVQQCRKL 456
Q A ++ +++
Sbjct: 90 VASFDQRRAFEKLKEI 105
>At3g46600.1 68416.m05058 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 583
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 229 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 408
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 161 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 219
Query: 409 ENPEAQLAAVQQCRKL 456
Q A ++ +++
Sbjct: 220 VASFDQRRAFEKLKEI 235
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 205 VFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 312
+FK KD+ R +NE+ E+RK ++ TL RR
Sbjct: 923 LFKPGWKDI--FRMNQNELEAEIRKVYQDSTLDPRR 956
>At2g13320.1 68415.m01468 expressed protein anf genefinder
Length = 129
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 163 TDKMATDQAKNRMHVF---KNAGKDVDEMRRRRNEVTVELRKNKRE 291
TD++A + + + K G++ +E RRRRN++ E R+ +R+
Sbjct: 85 TDRLAAEAGEEELRRLLENKRRGREEEE-RRRRNQIEEEERRRRRK 129
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 217 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 384
+G + ++ RRR+ RK+ R+ + +RR S S+ + E + +D +E
Sbjct: 68 SGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEE 123
>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
profile PF00168: C2 domain
Length = 374
Score = 27.1 bits (57), Expect = 7.7
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +1
Query: 154 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRN-EVTVELRKNKREETLQKRRNVPISY 330
++ST +D+ KN + +++ E+ RRR+ E E +NK E ++ + Y
Sbjct: 247 SSSTTTSLSDE-KNTADSNEKENREITEVSRRRSKEGEEEEEENKMNEETTMQKQIAEMY 305
Query: 331 STDEEEIDKNLATTDLDELVMNAANAEN 414
++ ++LA L + N + E+
Sbjct: 306 MRSMQQFTESLAKMKLPMDLHNKPHEED 333
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 27.1 bits (57), Expect = 7.7
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 133 ITTYCVETASTDKMATDQAKNRMHVFKN--AGKDVDEMRRRR--NEVTVEL 273
I+T+C T D + + N++H F N + ++ + R RR NE +V L
Sbjct: 769 ISTHCTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRRRDNENSVTL 819
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -3
Query: 252 PSPAHFIDIFACILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 88
PSP F ++F C+ +++ +F ++ + +D V Q+ + + S+K
Sbjct: 69 PSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAK 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,050,262
Number of Sequences: 28952
Number of extensions: 218329
Number of successful extensions: 882
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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