Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 174 8e-45
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 31 0.14
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 1.7
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.7
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 2.2
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 3.0
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 6.8
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 6.8
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 6.8
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.0
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 25 9.0
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 174 bits (423), Expect = 8e-45
Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 2/167 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVPM 198
I+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 7 IVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQ 66
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V+
Sbjct: 67 PLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAVH 124
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 519
+AILED+VFP EI+GKR R DG + IKV LD T+++K+ +F
Sbjct: 125 NAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSF 171
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 30.7 bits (66), Expect = 0.14
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 271 HVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDG 450
H V V D+ + P N+Q R +L+ + D + + V E V R K G
Sbjct: 1594 HTVLVLDKSVHQFPWESLPCLNRQSVSRVPSLSILRDILSQSFVVNGEYVEVR---KEAG 1650
Query: 451 SQLIKVHLD-KNQQTTIEHKV 510
S ++ LD K+ Q EHK+
Sbjct: 1651 SYILNPSLDLKHTQEMFEHKL 1671
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -1
Query: 314 LGLGRILRSPTKTTCLPLNFFSSSRTS 234
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 358 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 519
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKF 615
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 2.2
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 184 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 276
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 342 KEATLKDIDLCVRCYPRGLGLPC 410
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 360 P*AWPLLFVSNTSFVAGLRQDLTVSN 283
P A +LF+S TSF++G+ Q + ++N
Sbjct: 373 PPAAMILFISCTSFISGILQLVLLNN 398
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 304 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 429
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 491 VCWFLSKCTLMSCEPSNLTLMR 426
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 19 RGIIKASGAEADSFETSISQALVELETN 102
+ I +SG+E +F+T+ISQ E++T+
Sbjct: 30 KSISPSSGSELPNFKTTISQNNEEVKTS 57
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/66 (27%), Positives = 28/66 (42%)
Frame = +1
Query: 241 RELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIV 420
++LEK+F G + + PK + K RSR L + A + + VF
Sbjct: 108 KDLEKQFPGYDYTACHEDPVFPKKEKIYKADYKTSIQRSRVLAEFF-AKVPEKVFAVVTH 166
Query: 421 GKRIRV 438
G IR+
Sbjct: 167 GVDIRL 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,044,491
Number of Sequences: 5004
Number of extensions: 39649
Number of successful extensions: 133
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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