Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D03f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 163 6e-41
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 163 6e-41
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 161 2e-40
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 155 1e-38
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 155 1e-38
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.82
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 0.82
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 1.9
At1g52960.1 68414.m05990 hypothetical protein very low similarit... 28 4.4
At5g40640.1 68418.m04933 expressed protein 27 7.7
At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein si... 27 7.7
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 163 bits (396), Expect = 6e-41
Identities = 82/166 (49%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 198
I K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 8 IHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPF 67
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVH 123
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDT 516
+A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 124 EAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLET 169
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 163 bits (396), Expect = 6e-41
Identities = 82/166 (49%), Positives = 121/166 (72%), Gaps = 2/166 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 198
I K G FE ++QAL +LE TN +LK++L++LYI +A ++++ N+K+++IYVP
Sbjct: 8 IHKDKGVAPTEFEEQVTQALFDLENTNQELKSELKDLYINQAVQMDISGNRKAVVIYVPF 67
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
KAF+KI +RLVRELEKKFSGK V+FV R+I+ P + V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV----QRPRNRTLTSVH 123
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDT 516
+A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 124 EAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLET 169
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 161 bits (392), Expect = 2e-40
Identities = 84/166 (50%), Positives = 119/166 (71%), Gaps = 2/166 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELH-NKKSIIIYVPM 198
I K AE E ++QAL +LE TN +LK++L++LYI +A +++ N+K+++IYVP
Sbjct: 8 IKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKAVVIYVPF 67
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
KAF+KI RLVRELEKKFSGK V+FV R+I+ P V +RPR+RTLTSV+
Sbjct: 68 RLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV----QRPRNRTLTSVH 123
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDT 516
+A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T
Sbjct: 124 EAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLET 169
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 155 bits (377), Expect = 1e-38
Identities = 78/167 (46%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPM 198
I K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 8 IHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPY 67
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV+
Sbjct: 68 RLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVH 123
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 519
+AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F
Sbjct: 124 EAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 155 bits (377), Expect = 1e-38
Identities = 78/167 (46%), Positives = 118/167 (70%), Gaps = 2/167 (1%)
Frame = +1
Query: 25 IIKASGAEADSFETSISQALVELE-TNSDLKAQLRELYITKAKEIELHN-KKSIIIYVPM 198
I K G E + ++QA +LE TN +LK++L++LY+ A ++++ +K+I++ VP
Sbjct: 8 IHKEKGVELSELDEQVAQAFFDLENTNQELKSELKDLYVNSAVQVDISGGRKAIVVNVPY 67
Query: 199 PKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVY 378
KA++KI +RLVRELEKKFSGK V+ + R+I+ +P K A KRPR+RTLTSV+
Sbjct: 68 RLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIV-RPPKKGSAA---KRPRNRTLTSVH 123
Query: 379 DAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF 519
+AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F
Sbjct: 124 EAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAF 170
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 336 QTKEATLKDIDLCVRCYPRGLG 401
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 0.82
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 336 QTKEATLKDIDLCVRCYPRGLG 401
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 455 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 354
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g52960.1 68414.m05990 hypothetical protein very low similarity
to SP|Q9UUA2 DNA repair and recombination protein pif1,
mitochondrial precursor {Schizosaccharomyces pombe}
Length = 996
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 8/58 (13%)
Frame = +1
Query: 157 ELHNKKSIIIY--VPMPKLKAFQKIQIRLVREL-----EKKFSGKHVVFVGD-RKILP 306
EL + ++II+ PM F+ + R +R++ +K F GK +VF GD R++LP
Sbjct: 640 ELVKEANLIIWDETPMMSKHCFESLD-RTLRDIMNNPGDKPFGGKGIVFGGDFRQVLP 696
>At5g40640.1 68418.m04933 expressed protein
Length = 586
Score = 27.1 bits (57), Expect = 7.7
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 214 FQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYD 381
F++ + LV++L KH F G + +P+P QK + +T ++ D
Sbjct: 517 FRRHFVELVKKLSNDLDNKHNRFEGGSRSVPRPGKTVSRIFSQKSFKKKTSSNGSD 572
>At3g15800.1 68416.m02000 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 399
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +2
Query: 89 NSKPTPTSKPNFGSF 133
NSKP PTS+ NFG F
Sbjct: 337 NSKPGPTSERNFGLF 351
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,883,497
Number of Sequences: 28952
Number of extensions: 215534
Number of successful extensions: 670
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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