Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D02f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 31 0.10
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 29 0.32
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 29 0.42
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 28 0.97
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 27 1.3
SPAC13G7.11 |||mitochondrial inner membrane protein|Schizosaccha... 26 3.9
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 26 3.9
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 5.2
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 5.2
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 5.2
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 5.2
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 6.8
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ... 25 6.8
SPAC4F10.05c |||mitochondrial lipoate-protein ligase |Schizosacc... 25 6.8
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 6.8
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 25 6.8
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe... 25 6.8
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 9.0
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.0
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 31.1 bits (67), Expect = 0.10
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 145 PPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPK 291
PP P P+ P Q N +P R N + VN PP +P + P+
Sbjct: 239 PPPPPPTLPPQSTNTSQLPMPSRNVNN---LGSQVNIPPPPATPSQPPR 284
Score = 25.4 bits (53), Expect = 5.2
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Frame = +1
Query: 151 KPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVN----TSPPRQSPKKTPKILNKTP-NK 315
KP PV+ + PAR+ + + + + S PR +P P+ K P K
Sbjct: 941 KPVTEPPVRASSVTVEPARVTESMNKMNISEEAKKPEAPSRPRTAPIPEPEEQKKAPVEK 1000
Query: 316 PPSAKKQKSPIKVQ 357
+ K ++PI Q
Sbjct: 1001 KDAEKSVQAPIPAQ 1014
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 29.5 bits (63), Expect = 0.32
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +1
Query: 268 QSPKKTPKI---LNKTPNKPPSAKKQKSPIKVQKATERN-DKVDSVGIQMQDNKSGHRIG 435
+S KKTP+I N P P+ K K + +++ K S + M DN S HR G
Sbjct: 148 RSRKKTPEIAAPANIEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAMLPMLDNISNHRFG 207
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 29.1 bits (62), Expect = 0.42
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Frame = +1
Query: 133 GTKLPPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPKI-LNKTP 309
GTK P P+ P + ++ ++ PP+++P K+ L KTP
Sbjct: 140 GTKAPTTTKPAAPAAQSKTETPAPKVTSES----TKKETAAPPPQETPTKSADAELAKTP 195
Query: 310 NKPPSAKKQKSPIKVQKATERNDKVD 387
+ P +A K K+ + AT D D
Sbjct: 196 SAPAAALK-KAAEAAEPATVTEDATD 220
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 0.97
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +1
Query: 292 ILNKTPNKPPSAK--KQKSPIKVQKATERNDKVDSVGIQMQD 411
++NK + P K K+KS KVQK + + ++ + ++M+D
Sbjct: 26 LMNKNKKRKPEKKDDKEKSSKKVQKKNKVIESLNEMEVEMED 67
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +2
Query: 119 ACIELVQNCRQNQLQVSQFKNLMQGE-CPLGSERKIGSFLLTIL*TRHLHDSLQKRLQK 292
A + + +C + S+ +QG CP G+ GS LL RH DS+ + L K
Sbjct: 172 ASCKRLSSCESSGSPSSRVVGSLQGSYCPSGTHLHEGSLLLEDSSARHSSDSVHEYLVK 230
>SPAC13G7.11 |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 3.9
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 357 LNFYWRFLFFCTWWFIRR 304
+ F+WR+LF+ WW +++
Sbjct: 74 IRFWWRYLFY-GWWNLKK 90
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +2
Query: 41 LKMSQWKWI--FRXXXXXNLQHSDLQHWACIELVQNCRQ 151
LKM+ WK + L+ S+L W+C+E C++
Sbjct: 176 LKMALWKLVPAIASGNCVVLKPSELAPWSCLEFALICKE 214
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 208 IRKKNRFIFVDDFVNTSPPRQSPKKTPKILNKTPNKPPS 324
+++K+ +F+D+ T PP + KK K K N PS
Sbjct: 17 LKEKSETVFLDEAAITKPP--ASKKKRKNRKKKKNNGPS 53
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 277 KKTPKILNKTPNKPPSAKKQKSPIKVQKATE 369
K+ NK+PNK P K + S +K TE
Sbjct: 69 KQKASYSNKSPNKAPIQKSRGSSLKSHLETE 99
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 307 PNKPPSAKKQKSPIKVQKATER-NDKVDSVGIQMQDNK 417
PN + KK+ PI+V+ TE D + G Q ++ K
Sbjct: 2 PNPNQAIKKENEPIQVENPTELVRDDGEVEGYQKEEGK 39
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 265 RQSPKKTPKILNKTPNKPPSAKKQ 336
R +PK+ PK+ K P PS K Q
Sbjct: 728 RNAPKEVPKVPEKAPFFLPSLKDQ 751
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 177 LNWLTWSWFWRQFCTN 130
++WLTWS+ +R+ N
Sbjct: 1787 VDWLTWSYMYRRLVAN 1802
>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
Cho2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 336 LFFCTWWFIRRFVKYFWSLFWRLSW 262
LFF T +RR+ FWR+S+
Sbjct: 117 LFFMTTGAVRRYSMMLCFFFWRISY 141
>SPAC4F10.05c |||mitochondrial lipoate-protein ligase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 219
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +1
Query: 373 NDKVDSVGIQMQDNKSGHRIGMRLRNLLK 459
NDK+ ++GI ++ N + H + + + LK
Sbjct: 146 NDKIAAIGIHLRRNITSHGLALNVSTDLK 174
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = -3
Query: 447 SKSHANSMT*FIV-LHLDAYRIYLIIPLCSLLNFYWRFLFFCTW 319
S++ + T ++V +D + L LCSL + RF F C W
Sbjct: 550 SEAASRGTTVYLVDKRIDMLPMLLGTDLCSLRPYVERFAFSCIW 593
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 231 NEPIFLSDPSGHSPCIKFLNWLTWSW 154
N+ L DP +K + W+ WSW
Sbjct: 346 NQINILRDPLKAVNVLKAIRWMLWSW 371
>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 523
Score = 25.0 bits (52), Expect = 6.8
Identities = 27/113 (23%), Positives = 48/113 (42%)
Frame = +1
Query: 154 PAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPKILNKTPNKPPSAKK 333
P SE V + G + + N I VD + P ++ K+ K+L+ K
Sbjct: 356 PTQSENVSASASSGSSPTVSRANSVIDVDAY---PPEKRRRKEQSKLLS-------FFAK 405
Query: 334 QKSPIKVQKATERNDKVDSVGIQMQDNKSGHRIGMRLRNLLKLPKAHKWVCFE 492
QK + E +K + V I++ DN + IG+ ++ ++ A K + E
Sbjct: 406 QK------EEKEETNKTEDVSIEVLDNNNESDIGLTVKKKVENGNAWKQIFSE 452
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 244 FVNTSPPRQSPKKTPKILNKTPN 312
F +SPP P P+ LN+TP+
Sbjct: 109 FPLSSPPISEPDLRPQALNETPD 131
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 24.6 bits (51), Expect = 9.0
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 484 TPTCEPWVASINF*VACQFDDLIYCLAFGCLQNLPYHSS-L*PFELLLEIFVFL 326
T T E +IN A + +IYCL +N+P + L P ++++ FL
Sbjct: 1024 TGTTEEIYGNINAPEAVTYSAIIYCLRVLISENIPLNQGCLLPIKVIIPDNCFL 1077
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 24.6 bits (51), Expect = 9.0
Identities = 17/50 (34%), Positives = 22/50 (44%)
Frame = -3
Query: 273 RLSWR*RVHKIVNKNEPIFLSDPSGHSPCIKFLNWLTWSWFWRQFCTNSM 124
RLS R H I + P+ H P LN+L++S FC N M
Sbjct: 259 RLSVRSPAHPIYQTQHSHYDETPTSHHPDPARLNFLSFS-----FCVNPM 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,487
Number of Sequences: 5004
Number of extensions: 44198
Number of successful extensions: 108
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
- SilkBase 1999-2023 -