Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D02f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    26   0.20 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    26   0.20 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    26   0.20 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   1.4  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    23   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.7  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 417 FIVLHLDAYRIYLIIPLCSLLNFYWRFLFFCTW 319
           F+V  L  + +Y+I+P C       R ++F TW
Sbjct: 336 FVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITW 368


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 417 FIVLHLDAYRIYLIIPLCSLLNFYWRFLFFCTW 319
           F+V  L  + +Y+I+P C       R ++F TW
Sbjct: 336 FVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITW 368


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 417 FIVLHLDAYRIYLIIPLCSLLNFYWRFLFFCTW 319
           F+V  L  + +Y+I+P C       R ++F TW
Sbjct: 336 FVVCWLPFFLMYVIVPFCPDCCPSDRMVYFITW 368


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 222 IFLSDPSGHSPCIKFLNWLTWSWFWRQFCTNSMQAQCCRSECW 94
           IFLS  S  +P   F+  L  S F   FC +      C  E W
Sbjct: 76  IFLSTKSLRTPSNLFVINLAISNFLMMFCMSPPMVINCYYETW 118


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = -3

Query: 222 IFLSDPSGHSPCIKFLNWLTWSWFWRQFCTNSMQAQCCRSECW 94
           IFLS  S  +P   F+  L  S F   FC +      C  E W
Sbjct: 42  IFLSTKSLRTPSNLFVINLAISDFLMMFCMSPPMVINCYYETW 84


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 352 VQKATERNDKVDSVGIQMQDNKSGHRIGMRLRN 450
           VQ A E+N    S+ I + DN++   + M ++N
Sbjct: 559 VQAAFEQNTTDQSMDIDVCDNQTYTSLQMAMKN 591


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 145 PPKPAPSEP 171
           PPKPAP  P
Sbjct: 338 PPKPAPPPP 346


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 375 IPLCSLLNFYWR 340
           IP+  +L FYWR
Sbjct: 258 IPMLVMLFFYWR 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,086
Number of Sequences: 438
Number of extensions: 2974
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)