Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303D02f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27610.1 68418.m03308 myb family transcription factor contain... 34 0.050
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 32 0.27
At4g31880.1 68417.m04531 expressed protein 31 0.36
At3g50580.1 68416.m05532 proline-rich family protein contains pr... 30 1.1
At3g05380.1 68416.m00588 myb family transcription factor contain... 29 1.4
At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A) co... 29 1.9
At4g26630.1 68417.m03837 expressed protein 29 2.5
At3g10200.1 68416.m01221 dehydration-responsive protein-related ... 29 2.5
At5g25590.1 68418.m03045 expressed protein contains Pfam profile... 28 3.3
At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase cyc... 28 4.4
At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative / i... 28 4.4
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica... 28 4.4
At1g24150.1 68414.m03047 formin homology 2 domain-containing pro... 28 4.4
At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to D... 28 4.4
At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC ... 27 5.8
At3g21430.1 68416.m02704 expressed protein 27 5.8
At3g20540.1 68416.m02600 DNA-directed DNA polymerase family prot... 27 5.8
At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing pro... 27 5.8
At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin fa... 27 5.8
At5g11490.1 68418.m01341 adaptin family protein similar to SP|Q9... 27 7.7
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 7.7
At4g00890.1 68417.m00120 proline-rich family protein contains pr... 27 7.7
At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid t... 27 7.7
At1g58310.1 68414.m06633 F-box family protein contains F-box dom... 27 7.7
At1g46912.1 68414.m05219 F-box family protein-related contains w... 27 7.7
>At5g27610.1 68418.m03308 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 969
Score = 34.3 bits (75), Expect = 0.050
Identities = 17/69 (24%), Positives = 29/69 (42%)
Frame = +1
Query: 307 PNKPPSAKKQKSPIKVQKATERNDKVDSVGIQMQDNKSGHRIGMRLRNLLKLPKAHKWVC 486
P KPP+ +K +Q+ + + + + +L N L P +W
Sbjct: 494 PQKPPNRRKISLKKSLQERAKSLETTHDKPRSFKKLSEHELLQEKLSNCLSYPLVRRWCI 553
Query: 487 FEYFYSNID 513
+E+FYS ID
Sbjct: 554 YEWFYSAID 562
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 31.9 bits (69), Expect = 0.27
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Frame = +1
Query: 181 LNARGMPARIRKKNRFIFVDDFVNTSPPRQSPKKTPKILNKTPNKPPS-AKKQKSPIKVQ 357
+ + + A+ R + + +D PP +P + + L KTPN P + AKK+K+ K +
Sbjct: 256 VQSMSLAAKARPTTKLLDAEDLPKLEPPT-APFRRLRKLYKTPNSPDNEAKKRKAGKKSK 314
Query: 358 KATERNDKVDSVGIQMQDNK-SGHRIGMRL 444
K +K I +D+ G G R+
Sbjct: 315 KTRPLPEKKWRKRISREDSSLQGSGDGRRI 344
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 31.5 bits (68), Expect = 0.36
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +1
Query: 235 VDDFVNTSPPRQSPKKTPKILNKTPNKP--PSAKKQKSPIKVQKATER 372
V + NTS P+ + K K+ + + KP P +KK S KV K +E+
Sbjct: 476 VSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSKKSTSETKVAKQSEK 523
>At3g50580.1 68416.m05532 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 265
Score = 29.9 bits (64), Expect = 1.1
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +1
Query: 256 SPPRQSPKKTPKILNKTPNKP-PSAKKQKSP 345
SPP +PKK+P + TP P P+ KK SP
Sbjct: 98 SPPPPTPKKSPSPPSLTPFVPHPTPKKSPSP 128
>At3g05380.1 68416.m00588 myb family transcription factor contains
Pfam profile:PF00249 Myb-like DNA-binding domain
Length = 1055
Score = 29.5 bits (63), Expect = 1.4
Identities = 22/84 (26%), Positives = 35/84 (41%)
Frame = +1
Query: 262 PRQSPKKTPKILNKTPNKPPSAKKQKSPIKVQKATERNDKVDSVGIQMQDNKSGHRIGMR 441
P+Q P L++ P QKS + K++E K + + + + +
Sbjct: 563 PKQVSDSGPTSLSQKPPNRRKKSLQKSLQEKAKSSETTHKAARSSRSLSEQEL--LLKDK 620
Query: 442 LRNLLKLPKAHKWVCFEYFYSNID 513
L L P A + FE+FYS ID
Sbjct: 621 LATSLSFPFARRRCIFEWFYSAID 644
>At3g44750.1 68416.m04817 histone deacetylase, putative (HD2A)
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
identical to cDNA putative histone deacetylase (HD2A)
GI:11066134
Length = 245
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 238 DDFVNTSPPRQSPKKTPKILNKT-PNKPPSAKKQKSPIKVQKATER 372
+D P + P + K N+T P P SAKK K + QK E+
Sbjct: 156 EDSEEEEPTPKKPASSKKRANETTPKAPVSAKKAKVAVTPQKTDEK 201
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 28.7 bits (61), Expect = 2.5
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 157 APSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSP-KKTPKILNKTPNKPPSAKK 333
A S P +K+ + A+ RKK DD +TSP S KK+ + +P SA K
Sbjct: 610 AKSSPPEKITQKRSSAK-RKKT-----DDDSDTSPKASSKRKKSENPIKASPAPSKSASK 663
Query: 334 QKSPIKVQKATER-NDKV 384
+K + K ++ +DKV
Sbjct: 664 EKPVKRAGKGKDKPSDKV 681
>At3g10200.1 68416.m01221 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 591
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 231 NEPIFLSDPSGHSPCIKFLN 172
N+PI++S PS HS KF N
Sbjct: 35 NQPIYVSHPSSHSASSKFAN 54
>At5g25590.1 68418.m03045 expressed protein contains Pfam profile
PF04783: Protein of unknown function (DUF630)
Length = 775
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/34 (41%), Positives = 14/34 (41%)
Frame = +1
Query: 250 NTSPPRQSPKKTPKILNKTPNKPPSAKKQKSPIK 351
N P P P I N P PP K SPIK
Sbjct: 82 NVDPASPQPPPPPPIENLPPPPPPLPKFSPSPIK 115
>At4g33060.1 68417.m04709 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 504
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +1
Query: 289 KILNKTPNKPPSAKKQKSPIKVQKATERNDKVDS 390
K + TP+KP KK S +++T+R+D V S
Sbjct: 310 KEIGDTPSKPTQKKKSSSLKGREESTQRSDAVSS 343
>At4g10320.1 68417.m01697 isoleucyl-tRNA synthetase, putative /
isoleucine--tRNA ligase, putative similar to SP|P41252
Isoleucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.5)
(Isoleucine--tRNA ligase) (IleRS) (IRS) {Homo sapiens};
contains Pfam profile PF00133: tRNA synthetases class I
(I, L, M and V)
Length = 1190
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
Frame = -3
Query: 441 SHANSMT*FIVLHLDAYRIYLIIP-----LCSLLNFYWRF 337
S S+ F+ +DAYR+Y ++P L +L N Y RF
Sbjct: 730 SATQSLVRFVREEMDAYRLYTVVPRLLKFLDNLTNIYVRF 769
>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
to gi_3883128_gb_AAC77827
Length = 133
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +1
Query: 253 TSPPRQSPKKTPKILNKTPNKPPSAKKQKSPIKVQKATE 369
T P QSP+ T + + N PPSA P+ Q TE
Sbjct: 36 TPTPSQSPRATAPAPSPSANPPPSAPTTAPPVS-QPPTE 73
>At1g24150.1 68414.m03047 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 725
Score = 27.9 bits (59), Expect = 4.4
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Frame = +1
Query: 145 PPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQSP-KKTPKILNKTPNKPP 321
PP P P PV++ P + KN SPP P KKT + + KPP
Sbjct: 244 PPPPPPPIPVKQSATPPPPPPPKLKNN--------GPSPPPPPPLKKTAALSSSASKKPP 295
Query: 322 SAKKQKS 342
A + S
Sbjct: 296 PAPRGSS 302
>At1g13450.1 68414.m01572 DNA binding protein GT-1 identical to DNA
binding protein GT-1 GI:598073 from [Arabidopsis
thaliana]
Length = 406
Score = 27.9 bits (59), Expect = 4.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 268 QSPKKTPKILNKTPNKPPSAKKQKS 342
+S K TP NK+PN PP++ K S
Sbjct: 174 RSKKVTPPQYNKSPNTPPTSAKVDS 198
>At4g27020.1 68417.m03886 expressed protein gene F20P5.12 of BAC
F20P5 from Arabidopsis thalianachromosome 1,
PID:g2194125
Length = 523
Score = 27.5 bits (58), Expect = 5.8
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Frame = +1
Query: 343 PIKVQKATERNDKVDSVGIQMQDNK--------SGHRIGMRLRNLLKLPKAHKWVCFEYF 498
P + A+ RND V+ G +NK SG G ++ K+ KAH W C + +
Sbjct: 58 PTFIGSASVRNDAVEWKGACFYENKAWLELNNKSGSEFGGGTLHI-KVDKAHSWTCMDIY 116
>At3g21430.1 68416.m02704 expressed protein
Length = 961
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/79 (18%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Frame = +1
Query: 292 ILNKTPNKPPSAKKQKSPIKVQKATERNDKV-DSVGIQMQDNKS----GHRIGMRLRNLL 456
++ K N P + ++ + + T + K+ +++ ++ D ++ + + +
Sbjct: 364 VIKKQVNLPTKVRSRRKIVTEKPLTIDDGKISETIVSELSDTQTLFPNDKETAEKFSHCI 423
Query: 457 KLPKAHKWVCFEYFYSNID 513
+A +W FE+FYS ID
Sbjct: 424 SSFRARRWCIFEWFYSAID 442
>At3g20540.1 68416.m02600 DNA-directed DNA polymerase family protein
similar to PolI-like DNA polymerase [Oryza sativa]
GI:19912795; contains Pfam profiles PF01612: 3'-5'
exonuclease, PF00476: DNA polymerase I family A
Length = 1034
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 104 DLQHWACIELVQNCRQNQLQVSQFKNLMQGECPLGSERKIGS 229
D + A IE+V Q ++ VS+F+N CP +GS
Sbjct: 510 DRDYLAQIEIVAKAEQ-EIAVSRFRNWASKHCPDAKHMNVGS 550
>At2g25910.1 68415.m03109 3'-5' exonuclease domain-containing
protein / K homology domain-containing protein / KH
domain-containing protein contains Pfam profiles
PF01612: 3'-5' exonuclease, PF00013: KH domain
Length = 341
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +1
Query: 142 LPPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQ 270
+PP+P P Q+ N +P I + F DF+N SP ++
Sbjct: 14 IPPEPGGRSPTQEANEPPVPIYI-VTDPFQLPADFLNPSPEKK 55
>At1g28290.1 68414.m03472 pollen Ole e 1 allergen and extensin
family protein similar to arabinogalactan protein
[Daucus carota] GI:11322245; contains Pfam profile
PF01190: Pollen proteins Ole e I family
Length = 359
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 259 PPRQSPKKTPKILNKTPNKPPSAKKQKSPIK 351
PP ++P K P K P KPP + K P+K
Sbjct: 94 PPTKAPVKPP---TKPPVKPPVSPPAKPPVK 121
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 259 PPRQSPKKTPKILNKTPNKPPSAKKQKSPIK 351
PP ++P K P K P KPP + K P+K
Sbjct: 166 PPTKAPVKPP---TKPPVKPPVSPPAKPPVK 193
>At5g11490.1 68418.m01341 adaptin family protein similar to
SP|Q9WV76 Adapter-related protein complex 4 beta 1
subunit (Beta subunit of AP- 4) {Mus musculus},
beta-adaptin Drosophila 1 {Drosophila melanogaster}
GI:434902; contains Pfam profile: PF01602 Adaptin N
terminal region
Length = 841
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 130 VGTKLPPKPAPSEPVQKLNAR 192
+G P P PS P+ KLNAR
Sbjct: 704 LGLSTAPAPTPSPPLLKLNAR 724
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = -3
Query: 429 SMT*FIVLHLDAYRIYLIIPLCSLLNFYWRFLFFCTW---WFIRRF 301
S++ FIVL + ++ + C L +W +FC W WF RF
Sbjct: 9 SISSFIVLRIFSFLWFSRWFCCGLCGRFWFRCWFCCWFQFWFRCRF 54
>At4g00890.1 68417.m00120 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 431
Score = 27.1 bits (57), Expect = 7.7
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +1
Query: 145 PPKPAPSEPVQKLNARGMPARIRKKNRFIFVDDFVNTSPPRQ-SPKKTPKILNKTPNKPP 321
PP P+ S + ++ P K ++ + SPP SPK + +K+P PP
Sbjct: 228 PPLPSKSIDENETRSQSPPISPPKSDKQARSQTHSSPSPPPLLSPKASENHQSKSPMPPP 287
Query: 322 SAKKQKS 342
S Q S
Sbjct: 288 SPTAQIS 294
>At3g22120.1 68416.m02792 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 334
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +1
Query: 259 PPRQSPKKTPKILNKTPNKPPSAKKQKSPIKVQ 357
PP P K P + TP KPP+ K P V+
Sbjct: 49 PPAVKPPKPPAVKPPTP-KPPTVKPHPKPPTVK 80
>At1g58310.1 68414.m06633 F-box family protein contains F-box domain
Pfam:PF00646
Length = 505
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = +1
Query: 355 QKATERNDKVDSVGIQMQDNKSGHRIGMRLRNLLKLPKAHKWV 483
Q +T D VD V +++QDN H+ +++R+ + + + W+
Sbjct: 82 QLSTSFMDFVDQV-LRLQDNSPLHKFSLKIRDCVDIVRIICWI 123
>At1g46912.1 68414.m05219 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain; similar to hypothetical protein GI:4589954 from
[Arabidopsis thaliana] contains weak hit to TIGRFAM
TIGR01640 : F-box protein interaction domain;
Length = 312
Score = 27.1 bits (57), Expect = 7.7
Identities = 28/98 (28%), Positives = 46/98 (46%)
Frame = -3
Query: 408 LHLDAYRIYLIIPLCSLLNFYWRFLFFCTWWFIRRFVKYFWSLFWRLSWR*RVHKIVNKN 229
+HL ++ +++ + S NF W+ L C+ + V Y LFW+L K+ N
Sbjct: 33 VHLQKWQQVVLLLIPSTSNF-WKELKCCS-----KRVSY--GLFWKLDIT--SPKVGTGN 82
Query: 228 EPIFLSDPSGHSPCIKFLNWLTWSWFWRQFCTNSMQAQ 115
+ L G+ P K L W+ F+RQ T++ Q Q
Sbjct: 83 --VILKCFFGYDPIRKQFKVLCWTNFYRQGRTSNEQYQ 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,949,932
Number of Sequences: 28952
Number of extensions: 228423
Number of successful extensions: 846
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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