Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D01f
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.05c |||diacylglycerol binding protein Bzz1 |Schizosacch...    27   0.99 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   9.3  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    24   9.3  

>SPBC12C2.05c |||diacylglycerol binding protein Bzz1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 0.99
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 174 ELCETSHRLQQRGKQYRQRQTEQLFVLSVSDFVVYRN 64
           E C+     +Q+  +YR+++T++   LS SD +  +N
Sbjct: 160 EACDDLESARQKNDKYREQKTQRNLKLSESDMLDKKN 196


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 46  DTNQSLVPINNEIANTENE 102
           D NQ  VP++NE AN  ++
Sbjct: 523 DPNQYYVPVSNESANATSQ 541


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 37   PNVDTNQSLVPINNEI 84
            P+VDT ++L+ INN++
Sbjct: 1259 PSVDTIEALISINNQL 1274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,170,906
Number of Sequences: 5004
Number of extensions: 14641
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)