Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D01f
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.      27   6.0  
AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain fa...    27   6.0  

>Z81458-4|CAB03824.1|  623|Caenorhabditis elegans Hypothetical
           protein C03E10.5 protein.
          Length = 623

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -3

Query: 191 TTMSS--KNCAKHRTACSNAASSIDRDKLSNFSFSVLA 84
           T+MS+  K CAK    C+N  +S +R   + F F V++
Sbjct: 429 TSMSTTKKVCAKSDLKCANGWTSFNRTSTNPFCFKVIS 466


>U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   NESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 99
           N  Y   DC G+ N DT+ S VP  +++ N  N
Sbjct: 165 NSLYCRSDCRGLDNPDTSAS-VPDYSKLNNNNN 196


>AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain
           family protein 7 protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 1   NESYTDPDCSGIPNVDTNQSLVPINNEIANTEN 99
           N  Y   DC G+ N DT+ S VP  +++ N  N
Sbjct: 165 NSLYCRSDCRGLDNPDTSAS-VPDYSKLNNNNN 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,748,403
Number of Sequences: 27780
Number of extensions: 87012
Number of successful extensions: 273
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)