Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303D01f
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase...    28   1.8  

>At1g05610.1 68414.m00581 glucose-1-phosphate adenylyltransferase,
           putative / ADP-glucose pyrophosphorylase, putative
           (APS2) similar to SP|P52416 from [Vicia faba]; contains
           Pfam profile PF00483: Nucleotidyl transferase; identical
           to cDNA GI:31408039
          Length = 476

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -1

Query: 226 NKEHNNLFIFAEQQCPLRTVRNIAPPAATRQAVSTET 116
           N E    + F ++QCPL T+    PP++   AV T +
Sbjct: 318 NMESIKSYRFYDRQCPLYTMPRCLPPSSMSVAVITNS 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,146,950
Number of Sequences: 28952
Number of extensions: 74514
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)