Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C12f
(521 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 30 5.7
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 30 5.7
BC126464-1|AAI26465.1| 1371|Homo sapiens erbb2 interacting prote... 29 7.5
BC115015-1|AAI15016.1| 1367|Homo sapiens ERBB2IP protein protein. 29 7.5
BC115012-1|AAI15013.1| 1371|Homo sapiens erbb2 interacting prote... 29 7.5
AK001180-1|BAA91538.1| 600|Homo sapiens protein ( Homo sapiens ... 29 7.5
AF276423-1|AAK69431.1| 1412|Homo sapiens densin-180-like protein... 29 7.5
AF263744-1|AAF77048.1| 1371|Homo sapiens erbb2-interacting prote... 29 7.5
AB033051-1|BAA86539.2| 1371|Homo sapiens KIAA1225 protein protein. 29 7.5
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 29.9 bits (64), Expect = 5.7
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = -3
Query: 480 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKIHNTKYNQYLK 301
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 300 MSTTTCNCNSRDRVVYGGNSADSTREQW 217
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>BC126464-1|AAI26465.1| 1371|Homo sapiens erbb2 interacting protein
protein.
Length = 1371
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 657 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 716
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 717 EEKFKAHDKKDFNLPE 732
>BC115015-1|AAI15016.1| 1367|Homo sapiens ERBB2IP protein protein.
Length = 1367
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 653 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 712
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 713 EEKFKAHDKKDFNLPE 728
>BC115012-1|AAI15013.1| 1371|Homo sapiens erbb2 interacting protein
protein.
Length = 1371
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 657 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 716
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 717 EEKFKAHDKKDFNLPE 732
>AK001180-1|BAA91538.1| 600|Homo sapiens protein ( Homo sapiens
cDNA FLJ10318 fis, clone NT2RM2000469. ).
Length = 600
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 51 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 110
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 111 EEKFKAHDKKDFNLPE 126
>AF276423-1|AAK69431.1| 1412|Homo sapiens densin-180-like protein
protein.
Length = 1412
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 657 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 716
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 717 EEKFKAHDKKDFNLPE 732
>AF263744-1|AAF77048.1| 1371|Homo sapiens erbb2-interacting protein
ERBIN protein.
Length = 1371
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 657 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 716
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 717 EEKFKAHDKKDFNLPE 732
>AB033051-1|BAA86539.2| 1371|Homo sapiens KIAA1225 protein protein.
Length = 1371
Score = 29.5 bits (63), Expect = 7.5
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = -3
Query: 282 NCNSRDRVVYGGN-SADSTREQWFFQPAKYEN-DVLFFIY--NRQFNDALELGTIVNASG 115
NC+S R+ + + DS+++ P K + D+ I + FN L+ G I+N+S
Sbjct: 657 NCSSPSRMSDSVSLNTDSSQDTSLCSPVKQTHIDINSKIRQEDENFNSLLQNGDILNSST 716
Query: 114 DRKAVGHDGEVAGLPD 67
+ K HD + LP+
Sbjct: 717 EEKFKAHDKKDFNLPE 732
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,489,523
Number of Sequences: 237096
Number of extensions: 1258669
Number of successful extensions: 2889
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2889
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4990119376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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