Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    85   1e-15
UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein F2...    48   1e-04
UniRef50_A2YB98 Cluster: Putative uncharacterized protein; n=2; ...    33   3.5  
UniRef50_Q1EBJ0 Cluster: Putative uncharacterized protein; n=1; ...    32   8.0  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 84.6 bits (200), Expect = 1e-15
 Identities = 35/57 (61%), Positives = 42/57 (73%)
 Frame = -1

Query: 279 IYEWXPRSGRRNVGRPLARWCDDLRTVAGKKWMRRAVDRAQWCGLGEAYVQQWTTVG 109
           + EW PR+GRR+VGRP  RW DDL  VAG  WM+ A DR+ W  LGEA+VQQWT+ G
Sbjct: 441 VLEWRPRAGRRSVGRPPTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTSFG 497



 Score = 50.8 bits (116), Expect = 2e-05
 Identities = 19/29 (65%), Positives = 26/29 (89%)
 Frame = -3

Query: 361 RNEVVRQRTKVIGIAQRVSKLKWQWAGHI 275
           RNE +R+RT+V  IA+R++K+KWQWAGHI
Sbjct: 401 RNEEIRRRTRVTDIARRIAKIKWQWAGHI 429


>UniRef50_UPI0000E4800E Cluster: PREDICTED: similar to protein
           F28E10.3 [imported] - Caenorhabditis elegans; n=4;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           protein F28E10.3 [imported] - Caenorhabditis elegans -
           Strongylocentrotus purpuratus
          Length = 824

 Score = 48.0 bits (109), Expect = 1e-04
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = -1

Query: 279 IYEWXPRSGRRNVGRPLARWCDDLRTVAGK-KWMRRAVDRAQWCGLGEAYVQQWTTVG 109
           I  W P  G+RN GR   RW D+L+   G+  W ++A++R  W    EA++ QW   G
Sbjct: 380 ITHWTPYEGKRNRGRQRKRWRDELQQFWGQTNWHQQALNRGIWNHHAEAFILQWIDNG 437



 Score = 34.7 bits (76), Expect = 1.1
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGHI 275
           N+ +R++TKV  I +   + KW WAGHI
Sbjct: 341 NKWIREQTKVQDILEAEKRRKWNWAGHI 368


>UniRef50_A2YB98 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. indica (Rice)
          Length = 93

 Score = 33.1 bits (72), Expect = 3.5
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +1

Query: 124 LLDIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPSQGATHV 246
           LL +G S+S P  PV  +  PLL G   EV+APP+ G   V
Sbjct: 14  LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGV 52


>UniRef50_Q1EBJ0 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 572

 Score = 31.9 bits (69), Expect = 8.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 145 QSTPLSPVYGSPHPLLAGYRSEVIAPPSQGATHVTSSAARXPLVYGQPT 291
           QS      + SP P   G+RS++ +PP Q  + V + ++  P     PT
Sbjct: 263 QSATYQEHFQSPAPSAQGFRSDIPSPPEQRPSPVRTQSSNSPTRVPSPT 311


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 464,562,406
Number of Sequences: 1657284
Number of extensions: 8826898
Number of successful extensions: 22795
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22787
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28437262108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)