Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    30   0.22 
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   1.2  
SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces pom...    26   2.7  
SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual             26   3.5  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    25   6.2  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   8.2  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.2  

>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 196 RQEVDEESRRPGSVVWIGRGLCPAVDDCG 110
           R  V ++  RPGS +++ R L P +D CG
Sbjct: 867 RGHVLQDIPRPGSPLYLVRALIPVIDSCG 895


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 139 LSQSTPLSPVYGSPHPLLAGYRSEVIAPPSQG 234
           L  STP  P YG+P     G R E     SQG
Sbjct: 159 LDASTPAVPYYGAPDQQQMGQRPEFAQNVSQG 190


>SPAC8F11.06 |||nuclear envelope protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 269 HSYMASPLPLQLADSLSYPDDFSSLSN-NLIPELSK 373
           H Y A+ +P  +  S   P + S +SN NLI   S+
Sbjct: 258 HDYAANAIPAMIPSSRFLPSNLSDISNRNLIEAASQ 293


>SPAC22H10.11c ||||Schizosaccharomyces pombe|chr 1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 281 ASPLPLQLADSLSYPDDFSSLSN 349
           A P PL+L+  L+Y +D +SL++
Sbjct: 344 AVPTPLELSAELAYKEDLTSLAS 366


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 290 LPLQLADSLSYPDDFSSLSNNLIP 361
           LP  +   L+YP D S LS+N  P
Sbjct: 427 LPKSVTPGLAYPHDSSMLSSNYRP 450


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 144  PIHTTEPGLRLSSSTS 191
            P HTTEP  R  SSTS
Sbjct: 1061 PNHTTEPSERRDSSTS 1076


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 467 IFKNENKLYFQSKDTSQLKVK 405
           + K+ N LYF  + +SQLK++
Sbjct: 763 VLKSTNSLYFDLETSSQLKLR 783


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 308 DSLSYPDDFSSLSNNLIPELS 370
           DSL   D+FS+LS++ IP+ S
Sbjct: 59  DSLDVRDNFSNLSSDEIPQSS 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,904,086
Number of Sequences: 5004
Number of extensions: 34753
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)