Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0995 - 7733808-7734089                                           33   0.12 
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733...    29   2.7  
01_04_0020 + 15142402-15143421                                         29   2.7  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    28   3.5  
01_01_0930 + 7347680-7347886,7348030-7348082,7348175-7348247,734...    28   3.5  
06_02_0136 + 12195422-12195435,12196047-12196122,12196896-121977...    27   6.2  
03_06_0548 - 34660096-34660499,34660630-34660726                       27   8.2  
03_06_0547 - 34656862-34657217,34657444-34657540                       27   8.2  

>06_01_0995 - 7733808-7734089
          Length = 93

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = +1

Query: 124 LLDIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPSQGATHV 246
           LL +G S+S P  PV  +  PLL G   EV+APP+ G   V
Sbjct: 14  LLLLGSSRSWP--PVAAAARPLLQGDGGEVVAPPAGGGVGV 52


>12_01_0800 -
           7331444-7331539,7331617-7331742,7331830-7331907,
           7332515-7332747,7332832-7332871,7333016-7333070,
           7333158-7333345,7333416-7333475,7333686-7333769,
           7334817-7334903,7335178-7335246,7335354-7335410
          Length = 390

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +1

Query: 154 PLSPVYGSPHPLLAGYRSEVIAPPSQ--GATHVTSSAARXPLVYGQPTATS 300
           P+ P YG+P P    Y   V A PS   GA   T  A   P     PT T+
Sbjct: 72  PMIPPYGTPPPPYVMYPPGVYAHPSMPPGAHPFTPYAMASPNGNADPTGTT 122


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 105 NSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRLPFGGHR 218
           ++P  +T  H P+P      GL L      R  FGGHR
Sbjct: 95  SNPAWNTVLHFPVPARFDTRGLALHVQLRARRSFGGHR 132


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -2

Query: 308 QQAEVAVGWPYTSGXRAAEDVTWVAPWLGGAM-TSER*PARSG*GEP*TGLSGVDWERPM 132
           Q+  +  GW    G  A++ V W  PW GG M        ++G G P    S    + P+
Sbjct: 329 QRKWIGAGW-ICFGDPASDLVVWQLPWCGGLMDEGGGVRGKAGSGAPKLARS----DLPL 383

Query: 131 SSSG 120
           SSSG
Sbjct: 384 SSSG 387


>01_01_0930 +
           7347680-7347886,7348030-7348082,7348175-7348247,
           7348493-7348594,7348697-7348798,7348888-7348959,
           7349067-7349129,7349210-7349251,7349620-7349679,
           7349755-7349865,7350044-7350214,7350392-7350482,
           7350571-7350845
          Length = 473

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 111 PQSSTAGHRPLPIHTTEPGLRLSSSTSC 194
           P +++  H PLP     P LRLS+STSC
Sbjct: 10  PLAASPLHTPLPARP-RPQLRLSTSTSC 36


>06_02_0136 +
           12195422-12195435,12196047-12196122,12196896-12197707,
           12197941-12198010,12199469-12199557,12199633-12199666
          Length = 364

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 202 RSEVIAPPSQGATHVTSSAARXPLVYGQP 288
           R+  +APP   +T   +S++  PL +G+P
Sbjct: 55  RNPTVAPPPSSSTTTRASSSLQPLSFGRP 83


>03_06_0548 - 34660096-34660499,34660630-34660726
          Length = 166

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 163 GSVVWIGRGLCPAVDDCGL 107
           GS  W   GLC   DDCGL
Sbjct: 15  GSAAW-STGLCDCFDDCGL 32


>03_06_0547 - 34656862-34657217,34657444-34657540
          Length = 150

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -3

Query: 163 GSVVWIGRGLCPAVDDCGL 107
           GS  W   GLC   DDCGL
Sbjct: 15  GSAAW-STGLCDCFDDCGL 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,368,156
Number of Sequences: 37544
Number of extensions: 244420
Number of successful extensions: 673
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)