SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.90 
SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)                   30   0.90 
SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)                    30   1.2  
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 30   1.2  
SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)                 29   1.6  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 29   1.6  
SB_57876| Best HMM Match : SH3_1 (HMM E-Value=0.15)                    29   2.8  
SB_57797| Best HMM Match : rve (HMM E-Value=6.9e-21)                   29   2.8  
SB_56243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_55060| Best HMM Match : rve (HMM E-Value=0.0085)                    29   2.8  
SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)                   29   2.8  
SB_46885| Best HMM Match : SH3_1 (HMM E-Value=0.021)                   29   2.8  
SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_35655| Best HMM Match : SH3_1 (HMM E-Value=0.97)                    29   2.8  
SB_32358| Best HMM Match : SH3_1 (HMM E-Value=0.97)                    29   2.8  
SB_31616| Best HMM Match : rve (HMM E-Value=6.9e-21)                   29   2.8  
SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)                 29   2.8  
SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_21329| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)                   29   2.8  
SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)                 29   2.8  
SB_45481| Best HMM Match : rve (HMM E-Value=3.1e-17)                   29   2.8  
SB_27233| Best HMM Match : SH3_1 (HMM E-Value=0.18)                    29   2.8  
SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)                    29   2.8  
SB_12115| Best HMM Match : rve (HMM E-Value=6.9e-21)                   29   2.8  
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)               29   2.8  
SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.8  
SB_2735| Best HMM Match : SH3_1 (HMM E-Value=0.97)                     29   2.8  
SB_36143| Best HMM Match : SH3_1 (HMM E-Value=0.18)                    28   3.6  
SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_52607| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_6199| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_32020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)            27   8.4  
SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_36643| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V + +W+W GH
Sbjct: 496 NEELWQRTKQQPVDQNVLQRRWRWIGH 522


>SB_31729| Best HMM Match : RVT_1 (HMM E-Value=0.023)
          Length = 423

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V + +W+W GH
Sbjct: 382 NEELWQRTKQQPVDQNVLQRRWRWIGH 408


>SB_55131| Best HMM Match : fn3 (HMM E-Value=0.0083)
          Length = 1266

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 160  SPVYGSPHPLLAGYRSEVIAPPSQGATHVTSSAARXPLVYGQPT 291
            +PV G PH  +     + + P  +    VT++ AR P V G PT
Sbjct: 1074 NPVTGRPHQAVQQPLPQQLPPQYRPPAIVTAAVARPPQVQGPPT 1117


>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1336

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
            D  ++   P++P Y SP P L   ++++  PPS
Sbjct: 1161 DTPMNPKMPVAPTYMSPQPQLVARKAQINEPPS 1193


>SB_41747| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P L   ++++  PPS
Sbjct: 570 DTPMNPKMPVAPTYMSPQPQLVARKAQINEPPS 602


>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
          Length = 492

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V + +W+W GH
Sbjct: 391 NEELWQRTKQQPVDQDVLQRRWRWIGH 417


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V + +W+W GH
Sbjct: 449 NEELWQRTKQQPVDQDVLQRRWRWIGH 475


>SB_57876| Best HMM Match : SH3_1 (HMM E-Value=0.15)
          Length = 216

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 149 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 181


>SB_57797| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 368

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 301 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 333


>SB_56243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 62  DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 94


>SB_55060| Best HMM Match : rve (HMM E-Value=0.0085)
          Length = 277

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 210 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 242


>SB_53148| Best HMM Match : rve (HMM E-Value=4.8e-21)
          Length = 1329

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
            D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 1262 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 1294


>SB_46885| Best HMM Match : SH3_1 (HMM E-Value=0.021)
          Length = 235

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 168 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 200


>SB_44206| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 703 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 735


>SB_35655| Best HMM Match : SH3_1 (HMM E-Value=0.97)
          Length = 129

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 62  DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 94


>SB_32358| Best HMM Match : SH3_1 (HMM E-Value=0.97)
          Length = 129

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 62  DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 94


>SB_31616| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 1183

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
            D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 1116 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 1148


>SB_30470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 912

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 129 GH-RPLPIHTTEPGLRLS-SSTSCRLPFGGH 215
           GH RP P+ +TEP +R++  ST  R+  G H
Sbjct: 742 GHTRPYPVFSTEPYIRVTLQSTESRIVSGNH 772


>SB_24272| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
          Length = 1197

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
            D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 1130 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 1162


>SB_23180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 226

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V   +W+W GH
Sbjct: 172 NEELWQRTKQQPVDQDVLHRRWRWIGH 198


>SB_21329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 35  DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 67


>SB_15802| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 481

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 414 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 446


>SB_46439| Best HMM Match : RVT_1 (HMM E-Value=4.8e-25)
          Length = 1641

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V   +W+W GH
Sbjct: 146 NEELWQRTKQQPVDQDVLHRRWRWIGH 172



 Score = 28.7 bits (61), Expect = 2.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 358 NEVVRQRTKVIGIAQRVSKLKWQWAGH 278
           NE + QRTK   + Q V   +W+W GH
Sbjct: 506 NEELWQRTKQQPVDQDVLHRRWRWIGH 532


>SB_45481| Best HMM Match : rve (HMM E-Value=3.1e-17)
          Length = 414

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 347 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 379


>SB_27233| Best HMM Match : SH3_1 (HMM E-Value=0.18)
          Length = 241

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 175 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 207


>SB_14016| Best HMM Match : rve (HMM E-Value=0.0027)
          Length = 430

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 363 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 395


>SB_12115| Best HMM Match : rve (HMM E-Value=6.9e-21)
          Length = 428

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 361 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 393


>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
          Length = 1311

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130  DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
            D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 1244 DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 1276


>SB_4090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2342

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 129 GHRP--LPIHTTEPGLRLSSSTSCRLPFGG 212
           G+RP  LP+  T  GL +  +TSC   FGG
Sbjct: 463 GYRPEKLPLRRTPDGLAILDNTSCGPVFGG 492


>SB_2735| Best HMM Match : SH3_1 (HMM E-Value=0.97)
          Length = 129

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 62  DTPMNPKMPVAPTYMSPQPQVVARKAQINEPPS 94


>SB_36143| Best HMM Match : SH3_1 (HMM E-Value=0.18)
          Length = 167

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 130 DIGLSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           D  ++   P++P Y SP P +   ++++  PPS
Sbjct: 100 DTPMNLKMPVAPTYMSPQPQVVARKAQINEPPS 132


>SB_47102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 275 YMASPLPLQLADSLSYPDDFSSLSN 349
           Y+A+  P Q   SL YPDD+S++ +
Sbjct: 28  YLANQHPSQHVISLDYPDDYSTIKD 52


>SB_6110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2051

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 326  RDSSKS--QQAEVAVGWPYTSGXRAAEDVTWVAPWLGGAMTSE 204
            +DSS +  ++ +VA   P      AAE V W+AP LG  +TS+
Sbjct: 1299 KDSSIAVDEKEKVADLTPAYVSAMAAESVMWLAPRLGPVLTSQ 1341


>SB_52607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 LSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           ++   P++P Y SP P +   ++++  PPS
Sbjct: 1   MNPKMPVAPTYMSPQPQVVARKAQINEPPS 30


>SB_6199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 LSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           ++   P++P Y SP P +   ++++  PPS
Sbjct: 1   MNPKMPVAPTYMSPQPQVVARKAQINEPPS 30


>SB_32020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 LSQSTPLSPVYGSPHPLLAGYRSEVIAPPS 228
           ++   P++P Y SP P +   ++++  PPS
Sbjct: 1   MNPKMPVAPTYMSPQPQVVARKAQINEPPS 30


>SB_35206| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=0.012)
          Length = 1148

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 219  CDDLRTVAGKKWMRRAVDRAQWCGLGEAYVQQWTTVG 109
            C  L+ V GK+W+RR V  +   G G+   Q+ T  G
Sbjct: 1006 CSGLKGVLGKEWLRRTVSGS---GSGQREPQRRTVSG 1039


>SB_31317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 193 AGYRSEVIAPPSQGATHVTSSAAR 264
           +G RSEV+    QGA H   SA R
Sbjct: 678 SGLRSEVVGELGQGAKHCAESAVR 701


>SB_11518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1144

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 142 SQSTPLSPVYGSPHPLLAGYRSEVIAPPSQGATH-VTSSAARXPLVYGQPTAT 297
           S+   L P   + HP+      + I PP Q A+H V  + +  P++  Q  A+
Sbjct: 827 SEKRGLPPQQPASHPVFGTTSEQPILPPQQPASHPVFGTTSEQPILPPQQPAS 879


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,959,347
Number of Sequences: 59808
Number of extensions: 274850
Number of successful extensions: 701
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -