Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical ...    34   0.064
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    33   0.085
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    33   0.085
U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical ...    33   0.15 
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    27   5.6  
Z68161-2|CAA92297.1|  361|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AC103567-9|AAL35735.1|  204|Caenorhabditis elegans Hypothetical
           protein Y51F10.8 protein.
          Length = 204

 Score = 33.9 bits (74), Expect = 0.064
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
 Frame = -1

Query: 273 EWXPRSGRRNVGRPLARWCDDLRTVAGKK---------WMRRAVDRAQW 154
           +W PR  +R VGRP  RW D LR     +         W  +A DR  W
Sbjct: 143 DWCPRDEKRPVGRPPMRWNDSLRKEVTTRDAFGQVKQLWSTQAKDRKAW 191


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
            transcriptase protein.
          Length = 1066

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
 Frame = -1

Query: 273  EWXPRSGRRNVGRPLARWCDDLRTVAGKK---------WMRRAVDRAQW 154
            EW P   +R VGRP  RW D LR     +         W   A DR QW
Sbjct: 1007 EWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 1055


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 33.5 bits (73), Expect = 0.085
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
 Frame = -1

Query: 273 EWXPRSGRRNVGRPLARWCDDLRTVAGKK---------WMRRAVDRAQW 154
           EW P   +R VGRP  RW D LR     +         W   A DR QW
Sbjct: 746 EWRPYGWKRPVGRPPMRWTDSLRKEITTRDADGEVITPWSTIAKDRKQW 794


>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 273 EWXPRSGRRNVGRPLARWCDDLR 205
           EW P   +R VGRP  RW D LR
Sbjct: 832 EWRPYGWKRPVGRPPMRWTDSLR 854


>AC087794-3|AAG53700.1|  417|Caenorhabditis elegans Hypothetical
           protein Y32G9A.9 protein.
          Length = 417

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 273 EWXPRSGRRNVGRPLARWCDDLR 205
           EW P   +R VGRP  RW D LR
Sbjct: 358 EWRPYGWKRPVGRPPMRWTDSLR 380


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 105 NSPQSSTAGHRPLPIHTTEPGLRLSSSTSCRLP 203
           NSPQSS+   RP   HT  P          ++P
Sbjct: 516 NSPQSSSNSRRPSLAHTASPAFTHHHEPDSKIP 548


>Z68161-2|CAA92297.1|  361|Caenorhabditis elegans Hypothetical
           protein F20C5.4 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 491 VXFIYPI*IFKNENKLYFQSKDTSQLKVKL 402
           V F Y +  F   N+LYF S++  QL+ K+
Sbjct: 112 VKFYYGLSKFYQNNRLYFNSRNDQQLRGKV 141


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,461,258
Number of Sequences: 27780
Number of extensions: 201383
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)