Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS303C09f
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g39960.1 68418.m04846 GTP-binding family protein contains Pfa...    28   3.0  
At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family p...    27   5.2  
At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate 1-p...    27   9.1  

>At5g39960.1 68418.m04846 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 616

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 225 RWCDDLRTVAGKKWMRRAVDRAQW 154
           RWC  L T    +W+R+ + R  W
Sbjct: 498 RWCSRLSTGRLNRWLRKVMSRHSW 521


>At2g44660.1 68415.m05558 ALG6, ALG8 glycosyltransferase family
           protein similar to SP|P40351 Dolichyl pyrophosphate
           Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase (EC
           2.4.1.-) (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase) {Saccharomyces cerevisiae};
           contains Pfam profile PF03155: ALG6, ALG8
           glycosyltransferase family
          Length = 383

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 286 PTATSAC*LFELSR*L*FSVEQPHSGIIEKLVLIHTQCPSFTFSWEV 426
           P  T A  L  +S  L  + ++PHSG++ + V     C  F F W V
Sbjct: 279 PLTTFAMVLLAISPCLIKAWKKPHSGLVARWVAYAYTC-GFLFGWHV 324


>At4g04040.1 68417.m00574 pyrophosphate--fructose-6-phosphate
           1-phosphotransferase beta subunit, putative /
           pyrophosphate-dependent 6-phosphofructose-1-kinase,
           putative strong similarity to SP|Q41141
           Pyrophosphate--fructose 6-phosphate 1-phosphotransferase
           beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase,
           pyrophosphate-dependent) (Pyrophosphate-dependent
           6-phosphofructose-1-kinase) (PPI-PFK) {Ricinus communis}
          Length = 585

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 139 LSQSTPLSPVYGSPHPLLAGYRSEVIAPPSQGATHVTSSAARXPLVYGQPTA 294
           +  + PL  V+ +P  ++ G       PPS  A H        P ++GQP+A
Sbjct: 38  IDHTLPLPSVFKTPFKIIDG-------PPSSSAGHPEEIEKLFPNLFGQPSA 82


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,854,413
Number of Sequences: 28952
Number of extensions: 187232
Number of successful extensions: 389
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)