Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS303C07f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce... 30 0.24
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 29 0.56
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb... 28 0.73
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 0.97
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 28 0.97
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.3
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 1.3
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 1.7
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 27 1.7
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce... 27 1.7
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 27 2.2
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 26 3.0
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 3.0
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.0
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 26 3.9
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 26 3.9
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 25 5.2
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 25 5.2
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 5.2
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 25 5.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 6.8
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 25 6.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 25 6.8
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 9.0
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 9.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 25 9.0
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 25 9.0
>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 818
Score = 29.9 bits (64), Expect = 0.24
Identities = 27/121 (22%), Positives = 55/121 (45%), Gaps = 2/121 (1%)
Frame = +3
Query: 96 PQLKATTNPFLKPNPIEESGKEKDKEASENRLNESKENIEVPQFVPLGG--ANVASRNVN 269
P++ + +PF KPN + S ++ +S +R N S N + GG N+ SR+
Sbjct: 405 PKISSKASPFNKPNSV-HSEASRNTPSSIDRENASHSNPIMMHGNDFGGNFNNMQSRSTT 463
Query: 270 AVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKEN 449
P T++ A+P+ ++ + + N + + + GT + + A++ E+
Sbjct: 464 TSP-TSAVASPAPTENEDSNAAIERVANTLRKNPTISRRTRRAGTMD-RYATASSDYMES 521
Query: 450 N 452
N
Sbjct: 522 N 522
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.56
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Frame = +3
Query: 99 QLKATTNPFLKPNPIEESGKEKDKEASENRLNESKENIE--VPQFVPLGGANVASRNVNA 272
Q K ++ P ++ + E + E E+ E+ E + Q G V V +
Sbjct: 411 QEKPSSLPAVEQINVNEENNTPETEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVES 470
Query: 273 VPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSS---NGTTELLFTNAAASVK 443
A A P+ + +N + ++ +E E +++S NG T+ A K
Sbjct: 471 -SANEEEAEPNEIIEENAVKSLLNQEGPATNEEVEKNNANSENANGLTDEKIIEAPLDTK 529
Query: 444 ENNQESESSRA 476
EN+ + + S A
Sbjct: 530 ENSDDDKPSPA 540
>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 28.3 bits (60), Expect = 0.73
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = +3
Query: 273 VPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKENN 452
+PATNS + ++E V N + G++SA S S+ +E + + V+E
Sbjct: 153 IPATNSSEKSNVKIADEIAE--VTHSNSSIGKSSADLSSDSSSDSESNTSFSETDVEEEK 210
Query: 453 QESESSRAET 482
E E S AE+
Sbjct: 211 AE-EKSDAES 219
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 27.9 bits (59), Expect = 0.97
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 270 AVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSS--NGTTELLFTNAAASVK 443
A P N ++ +N +R KENG+ GEA + +S S T +A A+
Sbjct: 2369 AFPNRNESDGFPHIYSRNHDKR---KENGSQGEADNSNYSGSLMRRRTNDQEEDALATPS 2425
Query: 444 ENNQESESSRA 476
+ ++S S RA
Sbjct: 2426 SSRRDSRSKRA 2436
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 0.97
Identities = 36/133 (27%), Positives = 51/133 (38%)
Frame = +3
Query: 81 SVLRPPQLKATTNPFLKPNPIEESGKEKDKEASENRLNESKENIEVPQFVPLGGANVASR 260
SV+RPP +TT P + N SG S+N + SK + N +++
Sbjct: 235 SVVRPPTRTSTTRPLSRVNVTNASG-----SISKNSTSPSKVKV-----------NASTK 278
Query: 261 NVNAVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSSNGTTELLFTNAAASV 440
V V A + S +F +N + N SAT SN T + + A V
Sbjct: 279 IVRPVSAAQTVRPGSRIFRENSA------SNTQRPNVSAT----SNSTVRVASSLAVRPV 328
Query: 441 KENNQESESSRAE 479
N Q SR E
Sbjct: 329 SRNAQARTPSRLE 341
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 144 EESGKEKDKEASENRLNESKENIEVP 221
E G E++KEA E + E +N EVP
Sbjct: 24 ERLGAEREKEAVERIVQEENQNPEVP 49
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +3
Query: 81 SVLRPPQLKATTNPFLKPNPI----EESGKEKDKEASENRLNESKENIEVPQFVPLGGAN 248
S + P K TNP + I + KEKDK++ + N S E+P F ++
Sbjct: 412 SSTKAPLTKQQTNPSTPLSSIMAGLKGREKEKDKDSGISSENVSNNREELPSFRKRSSSS 471
Query: 249 VASRNVNAVPATNS 290
S + ++ A N+
Sbjct: 472 RQSEEIASLQAENA 485
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 27.1 bits (57), Expect = 1.7
Identities = 20/112 (17%), Positives = 50/112 (44%)
Frame = +3
Query: 153 GKEKDKEASENRLNESKENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLSE 332
G + +S + S E+ + + +S + ++ +++ + S G + S
Sbjct: 161 GSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSS 220
Query: 333 RVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSRAETSN 488
E+ ++ E + + SSS+ +E ++ +S ++ ESESS ++ +
Sbjct: 221 SSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDS 272
Score = 26.6 bits (56), Expect = 2.2
Identities = 24/123 (19%), Positives = 56/123 (45%)
Frame = +3
Query: 150 SGKEKDKEASENRLNESKENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLS 329
S E D +SE+ S E+ + + +S + ++ +++ + S G + S
Sbjct: 108 SSDESDSSSSESE--SSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSS 165
Query: 330 ERVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSRAETSNRDALVAA 509
E+ ++ E + + SSS+ +E ++ +S ++ ESESS + + + ++
Sbjct: 166 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 225
Query: 510 AAE 518
+E
Sbjct: 226 ESE 228
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 1.7
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)
Frame = +3
Query: 138 PIEESGKEKD-KEASENRLNESKENI-EVPQFVPLGGANVASRNVNAVPATNSPAAPSFV 311
PIEES + + S +++ES + +V + N S+N N + +SP
Sbjct: 330 PIEESKEPITVRRDSVIQIDESSAGLTDVISELNFTNHNDDSKNSNITTSNDSPVNEVEP 389
Query: 312 FGQNLSERVVIKENGNNGEASATEHSSSNGTTELLFT--NAAASVKENN 452
LS VV K+ + E+ + ++N + E L + + + S KEN+
Sbjct: 390 MAPELSSAVVEKKEPEDYESISAVDENTNDSNESLPSSHDYSESTKENS 438
>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 993
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/86 (27%), Positives = 40/86 (46%)
Frame = +3
Query: 204 ENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATE 383
ENI + PLG N+A R N +P P ++ N ++ + NNG AS +
Sbjct: 845 ENITMS--APLGYVNIAVRGGNIIP-LQQPGYTTYESRNNPYSLLIAMD--NNGFASGSL 899
Query: 384 HSSSNGTTELLFTNAAASVKENNQES 461
+ + + TN++ SVK N+ +
Sbjct: 900 YIDDGISMQ---TNSSLSVKLNSNSN 922
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 26.6 bits (56), Expect = 2.2
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 4/136 (2%)
Frame = +3
Query: 126 LKPNPIEESGKEKDKEASENRLNESKENIEVPQFVPLGGANVASRN---VNAVPATNSPA 296
+KP+ + +EK + N+ N E+ E+ VPL N + N N N P
Sbjct: 256 IKPSKQNKQKEEKKTISQGNKPNSRDEDSELSIDVPLSMLNRSLANNSQKNKKRTPNKPL 315
Query: 297 APSFVFGQNLSE-RVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSR 473
S + E V+K + E +S T+E A N + S+
Sbjct: 316 QESSINSVKEGESNPVVKRKRGRPRKNKLEIGNSVQTSEATQVKGAKKPAIRNAKKMSNE 375
Query: 474 AETSNRDALVAAAAEY 521
+ S +A+ E+
Sbjct: 376 KDDSLNSQSDSASGEF 391
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 111 TTNPFLKPNPIEESGKEKDKEASE-NRLNESKENIEVP 221
+TNPFL IE S + +A++ N+ + +IE+P
Sbjct: 61 STNPFLADTRIENSPLGSESKANQLNKQGTNVNHIEIP 98
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.2 bits (55), Expect = 3.0
Identities = 22/95 (23%), Positives = 36/95 (37%)
Frame = +3
Query: 213 EVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSS 392
E+ +PL AN A+ VPA+ AA V G + + N + A +
Sbjct: 228 ELVGHIPLRAANYANEYSQDVPASTHRAASELVHGVPMRASGI---NDPKHDLDAATRHN 284
Query: 393 SNGTTELLFTNAAASVKENNQESESSRAETSNRDA 497
N + A + V E +E + E + +A
Sbjct: 285 INSVAAASYVAARSRVIEEEEEPPNEVKERMDYEA 319
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 156 KEKDKEASENRLNESKENIE 215
KEK KE EN+LNE + I+
Sbjct: 1603 KEKTKEELENQLNEKSQRIK 1622
Score = 25.8 bits (54), Expect = 3.9
Identities = 19/74 (25%), Positives = 27/74 (36%)
Frame = +3
Query: 156 KEKDKEASENRLNESKENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLSER 335
K +D + +L E+ EN+ P S P T+ P A GQN +E
Sbjct: 1684 KTRDLQNKITQLEETIENLNKQLSNPEKTDESTSSVTETKPVTSKPTASKADVGQNATEA 1743
Query: 336 VVIKENGNNGEASA 377
K + SA
Sbjct: 1744 SSAKREPSGKSLSA 1757
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 351 NGNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSRAETSNRDALVAAAAE 518
NG ++ T+HS+S +TE + + E + E SN D +V E
Sbjct: 375 NGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYLQEYSNEDEIVLQVLE 430
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +3
Query: 318 QNLSERVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKENNQESESSRAETSNRD 494
QN S + KEN EAS++E + E T + +E + E E +
Sbjct: 311 QNESSSTIQKENTVQQEASSSEEEAVKSLPETQRTTSRIETQEEEIKEEEMEGEEEEEE 369
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 5.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 384 HSSSNGTTELLFTNAAASVKENNQESESSRAETSNRDALVA 506
HS T + L T+ ++ NN RAETS + VA
Sbjct: 302 HSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVA 342
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -1
Query: 347 FNNYPFTKILTKHKTRCGWAVGCWHRIYIARSHIC 243
F+N+ FT + R +AV C +YI + C
Sbjct: 374 FSNFSFTSVSFNLPYRMVFAVACQDAVYIYDTQTC 408
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/44 (25%), Positives = 20/44 (45%)
Frame = +3
Query: 180 ENRLNESKENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFV 311
ENR +E P+ + A + + VP+ S +A S++
Sbjct: 893 ENRAESKVHTLETPKVISARPAESVKQPLTPVPSMTSQSAQSYI 936
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 5.2
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 195 ESKENIEVPQFVPLGGANVASRNVNAVPATNSPAAPSFVFGQNLSERVVIKENGNNGEAS 374
E + +PQ V L + +++ N P TN+P S + +L + NNG
Sbjct: 98 ERTSEVSLPQTVNL--SEISNNNDKGQP-TNTPPVRSTIVAPSLYSEGSTLNHYNNGSHQ 154
Query: 375 ATEHSSSNGT 404
NGT
Sbjct: 155 VLHPQFQNGT 164
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 324 DFDQTQN*VRLGCWLLAPHLHCEKP 250
+ + QN + L C L PHL CE P
Sbjct: 93 NLENLQNLLYLHCDLNRPHLSCELP 117
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 25.0 bits (52), Expect = 6.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 294 LGCWLLAPHLHCEKPHL 244
LG LL LHCEK H+
Sbjct: 465 LGAQLLEEMLHCEKQHI 481
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 6.8
Identities = 15/79 (18%), Positives = 39/79 (49%)
Frame = +3
Query: 252 ASRNVNAVPATNSPAAPSFVFGQNLSERVVIKENGNNGEASATEHSSSNGTTELLFTNAA 431
+S + +++P+T+S ++ + + S + ++ ++ SSS+ T T ++
Sbjct: 233 SSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISS 292
Query: 432 ASVKENNQESESSRAETSN 488
+S ++ S SS +S+
Sbjct: 293 SSSSSSSPTSTSSTISSSS 311
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 378 TEHSSSNGTTELLFTNAAASVKENNQESESSRAETSNRDA 497
T +SSN + N+ V+ NN S+S+ S DA
Sbjct: 8 TRPTSSNSSANRNSNNSMNRVENNNSNSDSANTVDSRGDA 47
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -2
Query: 118 LVVAFNCGGRSTEPKG 71
L + NCGG T+P+G
Sbjct: 239 LAIIINCGGVPTDPRG 254
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +3
Query: 312 FGQNLSE--RVVIKENGNNGEASATEHSSSNGTTELLFTNAAASVKEN-NQESE 464
F Q+L++ ++K+N G S+++ S+ TE+L + S K++ QE++
Sbjct: 572 FNQSLAKFPHKILKKNVTRGSRSSSDQFSNETKTEILPDDQQQSKKDSVTQETQ 625
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 303 SFVFGQNLSERVVIKENGNNGEASATEHSSSNGTTE 410
SF+F + + + +E+ ++GE SA +HSS+ T +
Sbjct: 860 SFMFKEQDANKK--REDFHSGEVSAIQHSSAQNTLD 893
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 24.6 bits (51), Expect = 9.0
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Frame = +3
Query: 348 ENGNNGEASAT---EHSSSNGTTELLFTNAAASVKENNQESESSRAETSNRDAL 500
+NG G AT E+ S T TN AA N +E + S DAL
Sbjct: 1148 KNGAEGWVPATYVTEYKGSTPQTTASSTNVAAQANNNASPAEVNNLAGSLADAL 1201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,444
Number of Sequences: 5004
Number of extensions: 38941
Number of successful extensions: 191
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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